Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_001847.1 Length=135301 Score E Sequences producing significant alignments: (Bits) Value seq1240 109 5e-19 >seq1240 Length=9922 Score = 109 bits (120), Expect = 5e-19 Identities = 178/249 (71%), Gaps = 17/249 (7%) Strand=Plus/Plus Query 98216 GTGCGAGCCCGGCGCCCCGCTCCGCACGGTGAGCGAGGTGTTAAGCAGCAGCACGCCGCG 98275 ||| ||| |||| | |||| || ||||| ||| |||||| |||||||||||||| | Sbjct 2281 GTGAGAGTTCGGCTCTCCGCGGCGGACGGTAAGCACGGTGTTGAGCAGCAGCACGCCCTG 2340 Query 98276 GCGCGCCCAGTCCTCTAGGCAGCCGTGCGACGGCCG--CGGAGCTCCGGGAAAGTTCTTC 98333 ||| |||| ||||||||||||||||| || || || | | || ||| Sbjct 2341 GCGGCTCCAGCAGGACAGGCAGCCGTGCGACGGGCGGTCGATGCCC-----ACGTCGTTC 2395 Query 98334 TGCACGGCAGCGT---AGATGTTCTGGAGGCTGGGTGGGACCGGAACGCCGCGGTTCACG 98390 | ||| | | ||||||||| ||||||||| || ||| |||||| || ||| Sbjct 2396 ---ATGGCCTCCTTGAAGATGTTCTTGAGGCTGGGCGGCGGCGGGACGCCGTGGCGCAC- 2451 Query 98391 CTAAAAGCCAAG-CCGTGGGCTTGCCCGCGGCT-GTGATAGGGGTCCTGGCCCAGAATGA 98448 | | |||| || |||||||| ||| ||||| |||||| |||||||||||||| || | Sbjct 2452 CGAGAAGCTCAGTCCGTGGGCCTGCT-GCGGCCCGTGATACGGGTCCTGGCCCAGGATCA 2510 Query 98449 CAACCTTGA 98457 | ||||||| Sbjct 2511 CCACCTTGA 2519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432807925065614