Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4292 376 3e-99 seq6 163 3e-35 seq45 134 1e-26 seq745 131 2e-25 seq93 111 2e-19 >seq4292 Length=2137 Score = 376 bits (416), Expect = 3e-99 Identities = 597/845 (71%), Gaps = 16/845 (2%) Strand=Plus/Plus Query 116593 GAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAA 116652 |||||| |||||||||| | ||||| || || | | ||| |||||| |||||||| Sbjct 1 GAACCCGAACCGGTTCGTGCTGTTCCCGATCCAGGAGCACGACGTGTGGCAGATGTACAA 60 Query 116653 AAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCT-GTCCAAGGACACGAGCG 116711 ||||| ||||| ||||||||||| | ||||||| ||||||| || || | | | || | Sbjct 61 GAAGGCGGAGGCCTCGTTCTGGACGGCCGAGGAGCTGGACCTGGTGCACGACCTCAAG-G 119 Query 116712 ACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCG 116771 |||||| | | ||| ||||||||||| |||||||||||||||||||| || |||| Sbjct 120 ACTGGGCGAACCTGACGGACAACGAGCGGTTCTTCATCAAGCACGTGCTGGCGTTCTTCG 179 Query 116772 CCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGG 116831 | || |||||||| || || |||||||| |||| | | ||| | || ||||||| Sbjct 180 CTGCGAGCGACGGTATTGTGAACGAGAACCTGGCCATGAACTTCAGCAATGAAGTGCAGG 239 Query 116832 TGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAA 116891 || |||||| || |||||||||||||| ||||||||||| |||||| | ||| | || Sbjct 240 TGCCCGAGGTCCGCTGCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACGCCGAGG 299 Query 116892 TGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGA 116951 |||| ||| ||||| || |||||| | | | ||||||| || || || Sbjct 300 TGTACTCGCTGCTCATTGATACGTACATCAAGGACGCCGTGGAGAAGGACCACCTGCTGC 359 Query 116952 ACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCG 117011 ||||||||||||||| |||||||| || |||| || | |||||||| ||| || Sbjct 360 GCGCCATCGAGACGATCCCGTGCGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCG 419 Query 117012 -CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTC 117070 || || | | | | | | | ||||| ||| |||| ||||| ||||| |||||| | Sbjct 420 ACCCGC-GTGTGTCGTCGTACCCGGAGCGTCTGCTGGCGTTCGCCGCCGTGGAGGGCATT 478 Query 117071 TTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGC 117130 ||||| |||||| ||| | |||| || ||||||||||| |||||||||||||| ||| Sbjct 479 TTCTTCTCGGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGC 538 Query 117131 CTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGT 117190 |||| ||| |||||||| ||| | | ||||||||| |||| ||||| || || Sbjct 539 CTGAGCTTCTCGAACGAGCTGATCAGCCGTGACGAGGGTATGCACACGGACTTCGCGTGC 598 Query 117191 TTGCTG---TTCAAGCATTTGGTG---CAGCGACCGAGCGCGGCGCGCGTCAGGGAGATC 117244 | || | ||||| ||||| ||| ||| | | | |||| | || ||||| Sbjct 599 CTCATGTACTCCAAGC---TGGTGAACAAGCTGCCG-GAGAGCCGCGTG-CA-CGAGATT 652 Query 117245 GTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTG 117304 || ||||||||| | |||||||| ||| | ||| |||| || ||| ||| Sbjct 653 GTGCGCGACGCGGTGGTGATCGAGCACGAGTTCGTGCGCGACTCGCTCCCTGTGGAGCTG 712 Query 117305 CTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTG 117364 | || | || | | |||| || |||||||||||||| |||||| | |||||| Sbjct 713 ATCGGCATGAACTCGGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTGCTG 772 Query 117365 CTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTC 117424 | ||||| | | ||| ||||||| | |||||| | |||| ||| || | Sbjct 773 TACTCGCTGGGTGTGCCAAAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGACATG 832 Query 117425 ATCTC 117429 ||||| Sbjct 833 ATCTC 837 >seq6 Length=256829 Score = 163 bits (180), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||||||| ||||| |||||||| |||||||| ||||||| || | | Sbjct 245955 ATGCAGATCTTCGTAAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 246014 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| | || |||| ||||| ||||||||||| | ||||| Sbjct 246015 GACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCA 246073 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| ||||| || |||| ||||| || | ||||||||| Sbjct 246074 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTTGAAGACGGCCGCACGCTGAGCGACTACAA 246133 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | |||||||| || ||| |||| || | || ||| Sbjct 246134 CATCCAGAAGGAGTCTACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 246182 >seq45 Length=78880 Score = 134 bits (148), Expect = 1e-26 Identities = 173/236 (73%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 40683 CCGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGA 40742 ||| || ||||| || ||||| || ||||| || ||||| || ||||| | ||||| || Sbjct 56824 CCGGAAGATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGA 56883 Query 40743 AGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCG 40801 | | ||| | | |||| | ||| | ||||| | ||||| ||||||||||| Sbjct 56884 GCCGTCGGACTCGATCGACAACG-TGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGC 56942 Query 40802 CGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 40861 | |||||||| || || |||| ||| ||||| ||||| || |||| ||||| | | || Sbjct 56943 CTGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACGTTGAGCG 57002 Query 40862 ACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||||||| | || || || || ||| | ||| || | || ||| Sbjct 57003 ACTACAACATCCAGAAGGAGTCGACCCTTCACCTGGTGCTTCGCCTGCGTGGTGGC 57058 Score = 131 bits (144), Expect = 2e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| || ||||| | ||||| || | | Sbjct 57059 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 57118 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| | ||||| | ||||| ||||||||||| | ||||| Sbjct 57119 GACTCGATCGACAACG-TGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCTGACCA 57177 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| ||||| || |||| ||||| || | ||||||||| Sbjct 57178 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACGCTGAGCGACTACAA 57237 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||||||| | || || || || ||| Sbjct 57238 CATCCAGAAGGAGTCGACTCTTCACCTGGTG 57268 >seq745 Length=17434 Score = 131 bits (144), Expect = 2e-25 Identities = 143/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| |||||||| | ||||| || | || Sbjct 11925 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 11984 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||||| | | | ||||| | ||||| | ||||| ||||||||||| | |||||| Sbjct 11985 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 12044 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| ||| ||||| ||||| || |||| ||||| ||| ||||||||| Sbjct 12045 CAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAAC 12104 Query 40870 ATCCAGAAGG 40879 |||||||||| Sbjct 12105 ATCCAGAAGG 12114 >seq93 Length=65012 Score = 111 bits (122), Expect = 2e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || |||||| | |||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 59654 GGAATCCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 59713 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || ||| ||||||||||||||||||||| ||||||||| || ||| |||| || | Sbjct 59714 ACGCTCTCGGACTACAACATCCAGAAGGAGAGCACGCTGCACCTGGTGCTGCGTCTGCGT 59773 Query 40912 GGCGGCGGC 40920 || || ||| Sbjct 59774 GGTGGTGGC 59782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515181994733520