Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq45 141 8e-29 seq476 132 4e-26 seq6 132 4e-26 seq745 89.7 4e-13 >seq45 Length=78880 Score = 141 bits (156), Expect = 8e-29 Identities = 158/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || ||||| || || |||||||| ||||||| ||||| ||||| Sbjct 57268 CACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTC 57209 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || |||||| |||| ||||||||||| || || || ||||||||||||||| Sbjct 57208 AAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTG 57149 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| || || || | |||| | ||||| ||| || || | || | ||| || Sbjct 57148 GATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTT 57089 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||||||| || || || || ||||||||| Sbjct 57088 GCCGGTCAGCGTCTTCACGAAGATCTGCATG 57058 Score = 140 bits (154), Expect = 3e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || ||||| || || |||||||| ||||||| ||||| ||||| Sbjct 57040 CACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAACGTGCGGCCGTCCTC 56981 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || |||||| |||| ||||||||||| || || || ||||||||||||||| Sbjct 56980 AAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTG 56921 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| || || || | |||| | ||||| ||| || || | || | ||| || Sbjct 56920 GATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTT 56861 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||||| || || || || |||||||| Sbjct 56860 GCCGGTCAGCGTCTTCACGAAGATCTGCAT 56831 >seq476 Length=26050 Score = 132 bits (146), Expect = 4e-26 Identities = 522/818 (64%), Gaps = 20/818 (2%) Strand=Plus/Minus Query 132917 GCGCAAATAATACATGCCCGTTTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGA 132976 ||||| || |||||||| || || || |||| ||| ||||| ||||| || ||| Sbjct 4819 GCGCATGTAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCAT---CGA 4763 Query 132977 CACCACCGAG-TAA--GTGGGTTCGGCGACAAATAAATTCAGCGATTGACTCTGATCTAT 133033 | | | | | | || || ||||||| | || ||||| |||||||| || Sbjct 4762 CGTGAGCTTGCTGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAAT 4703 Query 133034 GAAAGGAGCACGGTCGGCGGCCATGTTTATTATACACTTTGATTTGATCTCCCATGCCGT 133093 | | | | | |||||||| | || || | || ||| ||||||||||| |||| Sbjct 4702 GTAGGCACCGCGGTCGGCCGACAAGTCCAGTACTGCCTTCTGCTTGATCTCCCACACCGT 4643 Query 133094 CTTGAAGAGATTCTTGACATGCTGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTC 133153 |||| | | |||||| || | || || | | | ||||||||||| ||| || Sbjct 4642 CTTGTACTTCTCCTTGACGTGATCGGGGATGGCCTTCACCTTCTGCACGGAGCCGCCGTC 4583 Query 133154 GGCCAAAATCTTGTTGCGCAATTCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGAC 133213 | || |||| ||||||| || || || | ||| | || || || ||| | || | Sbjct 4582 GTTCAGGATCTGATTGCGCACGTCGGGTGTCCAGATGCCCAGCTCAATGAGCTCCTTCAT 4523 Query 133214 GAGATACTGGTTGACCA-CTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCG 133272 || |||| ||| || | | |||| ||| ||||| || || || | | || | || | Sbjct 4522 CAGGTACTTGTTCACGATCGTGAA-CTCACCGGCCAGCACACGGCGGTTGTACATGTTGG 4464 Query 133273 ACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCA 133332 ||||| | || |||| || ||||||||||| || ||||| ||||| | |||||||||| Sbjct 4463 ACGTGTAGGGCTCGATGGACTCGTTGTTGCCTAGGATCTGGGCCGTGGAAGCCGTGGGCA 4404 Query 133333 TGTACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGT 133392 || ||||||| || ||||| | | |||| ||| | ||| || | | Sbjct 4403 TGGGGGCCACCAGCAGCGAGTTGCGAAGACCGTGTTTGACCACGTTCTCCTTGAGCGCCG 4344 Query 133393 TCCAGTCCCACAGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAAT 133452 ||||| ||| ||| ||| | |||||| | |||| || | Sbjct 4343 CCCAGTTCCAGAGACCCGAGGACGGGGTGACGCCCCACATGTCG------------AACT 4296 Query 133453 GCAAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGG 133512 | || || ||| |||| |||| | || | ||| || ||||| ||| |||| Sbjct 4295 GGAAGATCCCCTTGCTGGCCGGCGAGCCCTGGAACGTCTCGTAGGGGCCGAGCTCCTTGG 4236 Query 133513 CCAGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGATTGAATAGTTGA 133572 | | ||| | | ||| | ||||| |||| || || || ||| | ||||| Sbjct 4235 CAATCTCCATGGACGTCTCGACGGCGGCGTAGTAGATCGTCTCGAAGATGTTCTTGTTGA 4176 Query 133573 CGAACCTGGCATCGTCGCTATCGTAGGCGATGTCGAGAAGAACAAACGCGTCGGCCAAAC 133632 | ||| | ||||| ||| | ||| || | || | || ||||| || | | Sbjct 4175 GCTCGCGGGCCTGCTCGCTCTCGAACGCGTAGTTCATGAGGATGAAGGCGTCCGCGAGGC 4116 Query 133633 CCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTGG 133692 |||| | ||||| ||||||||| || || | ||| | | || ||||||| || Sbjct 4115 CCTGGACGCCGATGCCGATGGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCGGCCACGG 4056 Query 133693 GATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGG 133730 | |||| |||||||||||||| ||||||||| |||||| Sbjct 4055 GGTAGTAGTTGACGTCGATGACCTTGTTGAGGTTGCGG 4018 >seq6 Length=256829 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | |||||||| || || |||||||| ||||||| ||||| || Sbjct 246167 CAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTC 246108 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || |||||| |||| || |||||||| || || || |||||||||||||| Sbjct 246107 TTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTC 246048 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||| || || || || | |||| | ||||| ||| || |||| || | || Sbjct 246047 CTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATGGT 245988 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| || ||||| || |||||||| Sbjct 245987 CTTGCCCGTCAGCGTCTTTACGAAGATCTGCAT 245955 >seq745 Length=17434 Score = 89.7 bits (98), Expect = 4e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| || | ||||| ||||||||||| || || ||| |||| Sbjct 12112 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 12053 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 | |||||||| || || || |||||||||||||| ||||| || || || | || Sbjct 12052 AAGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 11993 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | | |||| | ||| || || | || | || ||||| ||||| || || ||||| Sbjct 11992 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 11933 Query 118731 ATCTGCATG 118739 ||||||||| Sbjct 11932 ATCTGCATG 11924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433799855221684