Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq476 230 5e-55 seq638 145 2e-29 seq4320 120 7e-22 seq4292 113 1e-19 seq103 95.1 3e-14 >seq476 Length=26050 Score = 230 bits (254), Expect = 5e-55 Identities = 1087/1705 (64%), Gaps = 80/1705 (5%) Strand=Plus/Plus Query 248418 CATGTACATCACCAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGGC 248477 ||||||| ||| |||||| ||||||||| | || |||| |||||||| ||| |||| Sbjct 2599 CATGTACGTCATCAAGCGCGACGGGCGCCAGGAGGACGTCAAGTTCGACAAGATCACGGC 2658 Query 248478 GCGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTCGA--TCATGTGGCCATC 248535 |||||||| |||||||| || || ||| | || ||| ||| || ||| | ||| Sbjct 2659 GCGCATCACCAAGCTCTGCTACGGGCTGAACCCGGACTACGTGGACGCCATCAAG--ATC 2716 Query 248536 GCCCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTTA 248595 | ||||| || | ||||||| ||| | || || || ||| | ||| | ||| | Sbjct 2717 TCGCAGAAGGTGGTGGCGGGCGTGTACCCGGGCGTGACCACGTCGGAATTAGACGAGCTG 2776 Query 248596 GCTGCGGAGACGGCGGCGTACATGGCGATTGCA-CACCCCGACTACTCGCTGCTGGCCGG 248654 || || ||||| ||||| ||| | | ||| ||||| |||| ||| | |||||| | Sbjct 2777 GCGGCCGAGACCGCGGCCTAC-CAGAGCACGCAGCACCCGGACTTCTCCCGGCTGGCGGC 2835 Query 248655 GAGGATCGCCGTCTCAAGGCTTCACAAAGAAACGAAAGAGTCGTTCGTCGAAACCAT--G 248712 | | |||||||| || | || ||||| | ||||| || ||| ||| | ||| Sbjct 2836 GCGCATCGCCGTGTCCAACCTGCACAAGAACACGAACAAGGTCTTCAGCGACAACATCGA 2895 Query 248713 GCTGACCTACA------TGC-CTATGGGATGG------------------TCGCCGATGA 248747 ||| | ||| ||| | | || || |||| ||||| Sbjct 2896 GCTCTTCCACAAGAACGTGCACGAGAAGACGGGCGCGGCGGCGCCGCTCATCGCTGATGA 2955 Query 248748 CGTCCACAC---CGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGG 248804 ||| || | ||| || | |||| | || || || || || | ||| Sbjct 2956 CGTATACGCGCTCGTGATGGCGCACAA---GGACGAGCTCAACTCGGCCATCATCCACGA 3012 Query 248805 CAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAA 248864 | || || |||||||| | ||| | || ||||| || ||| || ||| || Sbjct 3013 CCGCGACTTCGAGTACGACTACTTCGGGTTTAAAACACTCGAGCGCGGCTACCTCTTCCG 3072 Query 248865 AATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGAT 248924 | | |||||| | ||||| || ||||| ||| | ||||| ||||| | || || Sbjct 3073 CGTAAACGGCAAGGTGGTGGAGCGTCCGCAGCAAATGATTATGCGCGTGGCGCTGGGCAT 3132 Query 248925 TCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGAT 248984 ||||||| ||||| || || ||| ||||||||| ||| | | | Sbjct 3133 CCACAAGGCCGACATCCAGGCCGCGCTGGAGACGTACGAGCTCATGTCGCAGAAGTTCTT 3192 Query 248985 GACACATGCCACACCGACGCTCTTCAACGCCGGTAC----CGTCAACAATCAGCTGAGCT 249040 || || || || |||||||| || |||||||| || |||| |||||| || Sbjct 3193 CACGCACGCGACGCCGACGCTGTTTAACGCCGGAACGCCGCGTC----CGCAGCTGTCCT 3248 Query 249041 CGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAAC 249100 | ||||| || | |||||||| |||||||| |||| || || ||||||||||| || | Sbjct 3249 CCTGCTTCCTATTGGCCATGCAGGACGACTCCATCGAGGGTATCTATGACACGCTCAAGC 3308 Query 249101 AGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAG 249160 || || || || || | ||||| || ||||| || | | |||||| || | Sbjct 3309 AGTGCGCCTGCATCTCCAAGTGGGCGGGGGGTATCGGCATCAGCATGCACAACATTCGTG 3368 Query 249161 CGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTC 249220 | | ||||| || || || || | | || ||| | ||| | || | Sbjct 3369 CCACCAACAGCTACATTCGCGGCACCAACGGCTCCTCCAACGGCATCATCCCCATGCTGC 3428 Query 249221 GATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGT 249277 | || | ||| ||| ||| | | |||||| ||| || || ||||| | Sbjct 3429 GCGTGTTCAACGACACGGCCCGGTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCAGCT 3488 Query 249278 TCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGA 249337 ||||||| || | || ||||||||||| | || |||||||||||| || |||| Sbjct 3489 TCGCCATCTACCTCGAGCCCTGGCACGCCGACGTGTTCGAGTTCCTGGACCTGCGCAAGA 3548 Query 249338 ACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACT 249397 || ||||||||||||| | || || ||||| ||||||| |||||||| ||||| Sbjct 3549 ACCACGGCAACGAGCTGCACCGTGCCCGCGACCTGTTCTACGCGCTGTGGGTGCCCGACC 3608 Query 249398 TGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTT-TCTCCGTCCGACGCC 249456 |||||||| ||||| ||||| ||||| | |||| | || || | || ||| ||| Sbjct 3609 TGTTCATGAAGCGCGTGGAGGCCAACGGCAAGTGGA-GTTTGTTCTGCCCCAACGAGGCC 3667 Query 249457 CCGGACCTCATCGATCTACACGGCGCCGACTTCGACCAAGCCTATA--AGAAATACGAAT 249514 || | ||| ||| || | ||| || || ||||| || | || ||||| Sbjct 3668 CCCGGGCTCTACGAGTGCTGGGGGGACGAGTTTGA--GAGCCTCTACGACAAGTACGAGC 3725 Query 249515 CCAACGGCATCG---GCAAGACAATCAAGGCTCGGACCCT---TTTTGCGAAGGTGGTGG 249568 | | ||| || ||||||| ||||| || | | || || || | | ||| Sbjct 3726 GCGAGGGCCGCGCCCGCAAGACCATCAACGCGCAGCAGCTGTGGTTCGCCA---TCCTGG 3782 Query 249569 AGTCCCAGATAGAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAG 249627 | | ||||| ||||| || | ||| | | || | | ||| |||||| |||| |||| Sbjct 3783 ACGCGCAGATCGAGACGGGCGTGCCCT-TCATGCTCTACAAGGACGCGGCCAACCGCAAG 3841 Query 249628 AGTAACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTG-TGCAGAGGTGATTCA 249686 ||||| | | | || || ||||||||||| || || || ||| |||||||| | Sbjct 3842 TCCAACCAGCAGAACCTCGGCACCATCCGCTCCAGCAACCTGTGCTGC-GAGGTGATGGA 3900 Query 249687 ATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGCAAGCATCAATCTCGTGAGGCA 249746 ||| ||||| || ||| | ||||| ||||||||||| | | || | | Sbjct 3901 GTACACGTCCCCCGACGAGGTGGCCGTGTGCAACCTGGCCTCCGTGGCGCTGCCCAAGTT 3960 Query 249747 CGTGAGGGCGGACAGGACGTTCGACTTCGAGCGTCTTCACCGGACGGCGAAACAGGCGAT 249806 ||| || ||| | |||||||| | || || || | | || || || Sbjct 3961 CGT---GGACGACGGCGTGTTCGACTACCAGAAACTCTACGAGGTCACCAAGGTGGTGAC 4017 Query 249807 CAAAAACCTCAACAAGGTGATTGATGTCAATTTTTACCCCCT---TGAGGAATGCAGGTT 249863 | |||||||||||||| || || ||||| | |||||| | |||| ||| Sbjct 4018 CCGCAACCTCAACAAGGTCATCGACGTCAACTACTACCCCGTGGCCGAGGCGCGCA---A 4074 Query 249864 GTCCAACATGAAGCACCGTCCATGTGGGCTGGGCGTTCAGGCACTGCACGACGTCTACAT 249923 |||||||||| ||||| || || | ||||| |||| || |||| || ||| Sbjct 4075 GTCCAACATGCGCCACCGCCCCATCGGCATCGGCGTCCAGGGCCTCGCGGACGCCTTCAT 4134 Query 249924 GGTGATGGGATTCCCCTTCGAGTCAGAGGAGG-CAGCGACGCTAAATAAACAGATTTTCG 249982 | ||| | | | |||||| ||| ||| | |||| ||| || || | || |||| Sbjct 4135 CCTCATGAACTACGCGTTCGAGAGCGAGCAGGCCCGCGA-GCTCAACAAGAACATCTTCG 4193 Query 249983 AGACCATCTATCACGGGAGCGTCGAGGCGTCCATCGAAAGGGCCAAGATCGACGGACCAT 250042 |||| ||||| ||| ||||||| ||||||| || | |||||| ||| || | Sbjct 4194 AGACGATCTACTACGCCGCCGTCGAGACGTCCATGGAGATTGCCAAGGAGCTCGGCCCCT 4253 Query 250043 ACGAGAGTTTTCAGGGGTCGCCCGC 250067 |||||| || ||||| ||||| || Sbjct 4254 ACGAGACGTTCCAGGGCTCGCCGGC 4278 >seq638 Length=20703 Score = 145 bits (160), Expect = 2e-29 Identities = 266/387 (69%), Gaps = 6/387 (2%) Strand=Plus/Plus Query 253995 GGCGACCTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATC 254054 ||| | || || || ||||| ||| | || || || || || ||||||||||| ||||| Sbjct 7839 GGCCAGCTGCCCCACTTGCTGTTCTATGGACCCCCGGGCACGGGCAAGACGTCCACCATT 7898 Query 254055 CTGGCGCTGGCCCGAACCCTGTTGGGCGAGGGGAAC---ATGAGAGAGCGCGTGCTCGAG 254111 ||||| ||| || || || ||| || | | || | ||| | | ||| Sbjct 7899 GTGGCGGTGGGGCGCCAGCTCTTCGGCCCGGACTTCCGCAAGAACGGCCGCTTCTTGGAG 7958 Query 254112 CTGAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCC 254171 |||||||| || ||||| || || | | || || ||||| ||| |||||| ||| || Sbjct 7959 CTGAACGCGTCGGACGACCGAGGCATCAAGGTGGTGCGCGAGAAGGTCAAGAGCTTCGCC 8018 Query 254172 AAGATGTCGATTTCGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGAC 254231 || | || | | ||| | ||| |||||| |||||| || | | ||||| Sbjct 8019 CAGGGTGCCATCA-GCAGCGCCAGC--GGCCTTCCGCCCTTCAAGATCATTGTGCTGGAT 8075 Query 254232 GAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCAC 254291 ||||| ||| ||||||||| |||||||||||| || || || || | |||||||| || Sbjct 8076 GAGGCCGACTCCATGACGGGCGACGCGCAGTCGGCGCTGCGTCGCATGATGGAGAACTAC 8135 Query 254292 TCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATCGCCCCGCTG 254351 ||| || ||||| || ||||| | || ||||||||| ||||||| || || Sbjct 8136 TCCAAGGTAACGCGCTTCTGCCTCATCTGTAACTACGTGAGCCGCATCATCGAGCCTGTG 8195 Query 254352 GCTTCTCGGTGCGCCAAGTTTCGATTC 254378 || || || |||||||| ||||| ||| Sbjct 8196 GCCTCCCGATGCGCCAAATTTCGTTTC 8222 >seq4320 Length=1636 Score = 120 bits (132), Expect = 7e-22 Identities = 283/417 (68%), Gaps = 14/417 (3%) Strand=Plus/Plus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || |||| |||| ||||||| |||| | |||||||| ||||||||||| ||||| || Sbjct 1222 ACGCCGGCCTTGGAGTACTCGCCCACGCGCTTCTCAAAGAAGTTGGTCTTGCCCTGCAGC 1281 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGC 157363 || |||||||||||||| ||||| ||||| | |||||| | |||| ||||| Sbjct 1282 GAGATCATGTCCATCCAGTCGAACGGGTTCTTGACGTTGTAGATCTTGGACACGCCCAGT 1341 Query 157364 TGGTTCAGCCAGTAGTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATA 157423 || |||| | ||||||||| |||| |||||||| |||| | | | | || Sbjct 1342 GAGTACAGCAGGCGGTCCGCCACGAACTCGATGTACTGGCACATGAGCGCCGAGTTCATG 1401 Query 157424 CCGATGAGCGCGACGGGAAGCGCCGACGAAATGAATTCGCACTCAACGCTAACAGCGTGC 157483 || |||||| | || || |||| | | ||| ||| ||||| || |||| Sbjct 1402 CCAATGAGCTCCACAGGCAGCGAATCGCACACGAACTCGTGCTCAATCACCACCGCGTCG 1461 Query 157484 TTGAAAATTTCATGAACTC-TCTCCCGCGGCAGCCTATTCTTGAGATGCTTGTAGATGA- 157541 | || || || || | || || |||||| | || ||| | | ||| |||| Sbjct 1462 CGCACGATCTCGTGCACGCGGCTTTCG-GGCAGCTTGTTGACGAGCTTCGAGTACATGAG 1520 Query 157542 GAACG-GAAG-CCGTGGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGA 157599 | ||| |||| |||| ||| | |||||||||| | |||||| ||||| ||| Sbjct 1521 GCACGCGAAGTCCGT---GTGCATACCTTCGTCTCGGCTGATGAGCTCGTTCGAGAAGCT 1577 Query 157600 CAAACC---CTTGAACTTCTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCC 157653 || ||| | ||| | | |||||||| |||||| |||||| ||||||||| || Sbjct 1578 CAGACCAGGCATGA--GGCCG-CGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCC 1631 >seq4292 Length=2137 Score = 113 bits (124), Expect = 1e-19 Identities = 408/620 (66%), Gaps = 20/620 (3%) Strand=Plus/Minus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || |||| |||| ||||||| |||| | ||||| || ||||||||||| ||||||||| Sbjct 897 ACGCCGGCCTTGGAGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGA 838 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTAC-CCCAG 157362 || |||||||||||||| ||||| ||||| |||||| | ||| | | || ||||| Sbjct 837 GAGATCATGTCCATCCAGTCGAACGGGTTCTTCACGTTGTAGATCTT-TGGCACACCCAG 779 Query 157363 CTGGTTCAGCCAGTAGTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGAT 157422 | || |||| ||| ||||| |||| |||||||| |||| | | | | || Sbjct 778 CGAGTACAGCAGACGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCCGAGTTCAT 719 Query 157423 ACCGATGAGCGCGACGGGAAGCGCCGACG-AAATGAATTCGCACTCAACGCTAACAGCGT 157481 ||||| ||| | || || |||| | || | ||| ||| ||| | || |||| Sbjct 718 GCCGATCAGCTCCACAGGGAGCG-AGTCGCGCACGAACTCGTGCTCGATCACCACCGCGT 660 Query 157482 GCTTGAAAATTTCATGAACTC-TCTCCCGCGGCAGCCTATTCTTGAGATGCTTGTAGATG 157540 | ||| || || || | ||| | ||||||| | ||| || | ||| ||| Sbjct 659 CGCGCACAATCTCGTGCACGCGGCTCTC-CGGCAGCTTGTTCACCAGCTTGGAGTACATG 601 Query 157541 A-GAACG-GAAG-CCGTGGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAAC 157597 | | ||| |||| |||| ||| | || ||||| | | ||| || ||||| ||| Sbjct 600 AGGCACGCGAAGTCCGT---GTGCATACCCTCGTCACGGCTGATCAGCTCGTTCGAGAAG 544 Query 157598 GACAAACC---CTTGAACTTCTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCA 157654 || || | ||| | | |||||||| |||||| |||||| |||||| || || Sbjct 543 CTCAGGCCAGGCATGA--GGCCG-CGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCC 487 Query 157655 CTGAACTGCACGCCCTCCAGACAGGTGAAGCCGACTAGCCTCTCCGCGAGTGAAG-CGGT 157713 ||| | |||||||| || ||| | | || | ||||| | || | | Sbjct 486 GAGAAGAAAATGCCCTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTACGACGACACA 427 Query 157714 TTCGGGGTTCATCCACTTCTCTGCCCAGAGCGCCTTCTTTTCGATGATTGGCATCGTCTG 157773 |||| || |||||| |||||| |||| ||||| | | | || ||||||| Sbjct 426 CGCGGGTCGCA-CCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACGCACGGGATCGTCTC 368 Query 157774 GATAGATCGCATGACGTGTCTCTGCTCTTCCGTGTCCCTGAAGTAAGTCTGAATAAGCAG 157833 ||| | |||| | ||| || ||| | | |||| ||| ||| || | ||| ||||| Sbjct 367 GATGGCGCGCAGCAGGTGGTCCTTCTCCACGGCGTCCTTGATGTACGTATCAATGAGCAG 308 Query 157834 AGAGTACGATTCGCCGTGGA 157853 |||||| ||| |||||| Sbjct 307 CGAGTACACCTCGGCGTGGA 288 >seq103 Length=61076 Score = 95.1 bits (104), Expect = 3e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 115402 ATCGCACATCTGCTCTGAATCGGTTCGATGATTTTGGTGGAGTTGTTGCAGACTATGATG 115461 || || || | |||||| || || |||||||| ||||| |||||||||||| | | | Sbjct 41107 ATGGCGCAGCGGCTCTGGATGGGCTCGATGATCTTGGTCGAGTTGTTGCAGGCCAGCGCG 41048 Query 115462 AACCGCGTCGTGCTCGAGTAAACATCCATGATCCGTCGCAGCGCCTGGAAAGCACCAGGT 115521 || ||||| ||| |||| | | |||||| | || ||||||||||| || | | Sbjct 41047 AAGCGCGTGGTGGCCGAGAAGATCTCCATGGTGCGGCGCAGCGCCTGCTGGGCCGCGGCC 40988 Query 115522 GTCATCGAGTCTGCCTCGTCGAGAACGACAATCTT 115556 ||||||||||| |||||||| || | || ||||| Sbjct 40987 GTCATCGAGTCGGCCTCGTCCAGGATCACGATCTT 40953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073686922159936