Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq476 354 7e-93 seq4292 233 2e-56 seq45 154 1e-32 seq6 140 3e-28 seq745 118 9e-22 >seq476 Length=26050 Score = 354 bits (392), Expect = 7e-93 Identities = 997/1521 (66%), Gaps = 23/1521 (2%) Strand=Plus/Minus Query 22466 AACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCA 22525 ||||| |||| || || ||||| | ||| |||||||| ||| | || |||| || || Sbjct 4500 AACTCACCGGCCAGCACACGGCGGTTGTACATGTTGGACGTGTAGGGCTCGATGGACTCG 4441 Query 22526 TTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTT 22585 ||||| || || ||||| || || ||||| || ||||| || |||| ||| |||||||| Sbjct 4440 TTGTTGCCTAGGATCTGGGCCGTGGAAGCCGTGGGCATGGGGGCCACCAGCAGCGAGTTG 4381 Query 22586 CTCAAGCCGTGCTTTGAAATTTTACTC-TTGAGCATCGACCAGTCCCACAGATC---GGA 22641 | | ||||| ||||| | ||| |||||| || ||||| ||| ||| | ||| Sbjct 4380 CGAAGACCGTG-TTTGACCACGTTCTCCTTGAGCGCCGCCCAGTTCCAGAGACCCGAGGA 4322 Query 22642 CGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTC 22701 ||| || || | ||||||| ||| | || || | || || ||||| ||| | Sbjct 4321 CGGGGTGAC---GCCCCACATGTCGAACTGGAAGATCCCCTTGCTGGCCGGCGAGCCCTG 4265 Query 22702 GTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTA 22761 | |||| ||||| || || | ||||| || | || ||| | ||| |||| Sbjct 4264 GAACGTCTCGTAGGGGCCGAGCTCCTTGGCAATCTCCATGGACGTCTCGACGGCGGCGTA 4205 Query 22762 ATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCAT 22821 || || ||||||||||| |||||||| | ||| ||| |||| ||| || || | Sbjct 4204 GTAGATCGTCTCGAAGATGTTCTTGTTGAGCTCGCGGGCCTGCTCGCTCTCGAAC-GCGT 4146 Query 22822 A-CGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTT 22880 | ||| | | ||| |||||||| | ||||| ||||| || ||||| || |||| Sbjct 4145 AGTTCATGAGGATGAAGGCGTCCGCGAGGCCCTGGACGCCGATGCCGATGGGGCGGTGGC 4086 Query 22881 TCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCA 22940 || || ||| ||||||| || || || | || ||||| |||| | Sbjct 4085 GCATGTTGGACTTGCGCGCCTCGGCCACGGGGTAGTAGTTGACGTCGATGACCTTGTTGA 4026 Query 22941 AGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATT 23000 ||| | |||||| | || || | | ||||| | ||||| | Sbjct 4025 GGTTGCGGGTCACCACCTTGGTGACCTCGTAGAGTTTCTGGTAGTCGAACACGCC--GTC 3968 Query 23001 GTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGG 23060 || | || |||||| | || | ||||| || ||||| |||||||||||||| || Sbjct 3967 GT-CCACGAACTTGGGCAGCGCCACGGAGGCCAGGTTGCACACGGCCACCTCGTCGGGGG 3909 Query 23061 ACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCT 23120 |||||||||| | | ||| || || ||||| | || ||||| | || || Sbjct 3908 ACGTGTACTCCATCACCTCGCAGCACAGGTTGCTGGAGCGGATGGTGCCGAGGTTCTGCT 3849 Query 23121 GGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCT 23180 ||||| || || ||| || ||||||||||||||| | ||| ||||||||||| || Sbjct 3848 GGTTGGACTTGCGGTTGGCCGCGTCCTTGTAGAGCATGAAGGGCACGCCCGTCTCGATCT 3789 Query 23181 GCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTAC-CTGCCT 23239 ||| || | ||| || ||||| ||| |||| | ||| || | | ||| Sbjct 3788 GCGCGTCCAGGATGGCGAACCACAGCTGCTGCGCGTTGA-TGGTCTTGCGGGCGCGGCCC 3730 Query 23240 TCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCG 23299 || ||||||||| | ||| | ||||| ||| | || | || ||| || ||| Sbjct 3729 TCGCGCTCGTACTTGTCGTAGAGGCTCTCAAACTCGTCCCCCCAGCACTCGTAGAGCCCG 3670 Query 23300 GGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAA 23359 || | | | || || | | ||||||| | || || ||||| |||| || Sbjct 3669 GGGGCCTCGTTGGGGCAGAACAAACTCCACTTGCCGTTGGCCTCCACGCGCTTCATGAAC 3610 Query 23360 AGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTG 23419 || || || | ||| || ||||||||||| |||||||| || | ||| |||||| | Sbjct 3609 AGGTCGGGCACCCACAGCGCGTAGAACAGGTCGCGGGCACGGTGCAGCTCGTTGCCGTGG 3550 Query 23420 TTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCA 23479 ||||| || |||| || || |||||||| || ||||| ||||||||||| | ||| Sbjct 3549 TTCTTGCGCAGGTCCAGGAACTCGAACACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCG 3490 Query 23480 AACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACT 23539 || |||| | ||| ||||||||| || ||||| |||||||||| |||| |||| Sbjct 3489 AAGCTGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTACCGGGCCGTGTCGTTGAACACG 3430 Query 23540 CTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTT 23599 | ||||| || | || |||||||| | |||| | | ||| | | | || || Sbjct 3429 CGCAGCATGGGGATGATGCCGTTGGAGGAGCCG--TTGG--TGCCGCGAATGTAGCTGTT 3374 Query 23600 ----GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGC 23655 || |||| |||||| | | || || || || || || | || || || || Sbjct 3373 GGTGGCACGAATGTTGTGCATGCTGATGCCGATACCCCCCGCCCACTTGGAGATGCAGGC 3314 Query 23656 GCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAA 23715 ||| || || || ||||| ||||| ||||||||| ||| || | | || | | ||| Sbjct 3313 GCACTGCTTGAGCGTGTCATAGATACCCTCGATGGAGTCGTCCTGCATGGCCAATAGGAA 3254 Query 23716 ACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGT 23775 || || |||| |||| ||||| |||| ||||| ||||| | |||||||| Sbjct 3253 GCAGGAGGACAGCTGCGGACGCGGCGTTCCGGCGTTAAACAGCGTCGGCGTCGCGTGCGT 3194 Query 23776 AAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTG 23835 ||| | | |||||| || | |||||| || | ||||| | ||||| | ||| Sbjct 3193 GAAGAACTTCTGCGACATGAGCTCGTACGTCTCCAGCGCGGCCTGGATGTCGGCCTTGTG 3134 Query 23836 TATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAAT 23895 || || | || |||||||| ||||| | || || | ||| ||| |||||| | Sbjct 3133 GATGCCCAGCGCCACGCGCATAATCATTTGCTGCGGACGCTCCACCACCTTGCCGTTTAC 3074 Query 23896 TTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACG 23955 ||| || || || | | |||||||| || || ||||| || | ||||| || Sbjct 3073 GCGGAAGAGGTAGCCGCGCTCGAGTGTTTTAAACCCGAAGTAGTCGTACTCGAAGTCGCG 3014 Query 23956 ATCGTGCACTATGGCCGAATT 23976 ||||| | |||||||| || Sbjct 3013 GTCGTGGATGATGGCCGAGTT 2993 >seq4292 Length=2137 Score = 233 bits (258), Expect = 2e-56 Identities = 564/838 (67%), Gaps = 22/838 (3%) Strand=Plus/Plus Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 ||| | ||| | |||||||| ||||| || || ||||| ||||| | ||| || | ||| Sbjct 41 GACGTGTGGCAGATGTACAAGAAGGCGGAGGCCTCGTTCTGGACGGCCGAGGAGCTGGAC 100 Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 ||| | || || | || |||| ||| | || ||| | || || || Sbjct 101 CTGGTGCACGACCTCAAGGACTGGGCGAACCTGACGGACAACGAGCGGTTCTTCATCAAG 160 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 |||||| ||||||| ||||| || ||| |||||||| |||||||| ||| | | || Sbjct 161 CACGTGCTGGCGTTCTTCGCTGCGAGCGACGGTATTGTGAACGAGAACCTGGCC--ATGA 218 Query 57747 TTTTCA-CAA-GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 |||| ||| |||||||| ||| | |||| | ||||| ||||| || || | |||| Sbjct 219 ACTTCAGCAATGAAGTGCAGGTGCCCGAGGTCCGCTGCTTCTACGGCTTCCAGATCGCCA 278 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACG 57864 | || ||| | || | || |||| ||||| ||||| ||||||||| | |||||| || Sbjct 279 TCGAGAACATCCACGCCGAGGTGTACTCGCTGCTCATTGATACGTACATCAAGGACGCCG 338 Query 57865 ACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAG 57924 ||||| ||| | ||| ||||| || || |||| | || |||||| || Sbjct 339 TGGAGAAGGACCACCTGCTGCGCGCCATCGAGACGAT-CCCGTG--CGTGAAGAAGAAAG 395 Query 57925 AG---TGGTCAATCAAATGGATAAAAAGCGCCACGGCCA-CGTTCGCCGAGAGGCTAATC 57980 | ||| | |||| ||| | | ||| | | ||| | | ||| | || | Sbjct 396 CGCACTGGGCGCTCAAGTGG-TGCGACCCGCGTGTGTCGTCGTACCCGGAGCGTCTGCTG 454 Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGAT 58039 |||||||||||||| || || || ||||| |||||| ||| ||| | || || ||| | Sbjct 455 GCGTTCGCCGCCGTGGAGGGCATTTTCTTCTCGGGCTCCTTCTGC-TCCATCTTCTGGCT 513 Query 58040 GAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGA 58099 ||||| |||||||| ||||| ||||||| || |||||| |||| || ||||| Sbjct 514 CAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTCTCGAACGAGCTGATCAGCCGTGACGA 573 Query 58100 GGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCG 58159 |||| | || || || || |||||||| |||||||| | | || || || | | || Sbjct 574 GGGTATGCACACGGACTTCGCGTGCCTCATGTACTCCAAGCTGGTGAACAAGCTGCCGGA 633 Query 58160 GGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGA 58219 | ||| | || ||| | ||| ||||| | |||||| | ||||| || ||| Sbjct 634 GAGCCGCGTGCACGAGATTGTGCGCGACGCGGTGGTGATCGAGCACGAGTTCGTGCGCGA 693 Query 58220 AGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTT 58279 | || || |||| || |||| |||||| | | |||| ||||||| ||||| Sbjct 694 CTCGCTCCCTGTGGAGCTGATCGGCATGAACTCGGCGCTCATGTGCCAGTACATCGAGTT 753 Query 58280 TGTTGCCGACAGACTTTTGCTCGAACT-GATTGGAGAGCGTCA---TTACAACACGAAAA 58335 || |||||| | | |||| | ||| | | || | || | |||||| ||| | Sbjct 754 CGTGGCCGAC---CGTCTGCT-GTACTCGCTGGGTGTGCCAAAGATCTACAACGTGAAGA 809 Query 58336 ATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 | ||||| || | ||| | ||||||| ||| |||||||||| ||||| ||||| || Sbjct 810 ACCCGTTCGACTGGATGGACATGATCTCTCTCCAGGGCAAGACCAACTTCTTCGAGAA 867 >seq45 Length=78880 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| |||||||| | ||||| || ||||| Sbjct 57058 CATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTC 57117 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| |||| | || || |||| ||| |||||||| ||| | ||||| ||||| Sbjct 57118 GGACTCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCTGACCA 57177 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||||||||| ||| | || ||| || ||||||| || || Sbjct 57178 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACGCTGAGCGACTACAA 57237 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || ||||||||||| ||||| ||| | || | ||||| Sbjct 57238 CATCCAGAAGGAGTCGACTCTTCACCTGGTGCTTCGTCTTCGTGGCGG 57285 Score = 149 bits (164), Expect = 6e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| ||||| ||||| |||||||| | ||||| || ||| Sbjct 56828 AAGATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCG 56887 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || ||| |||| | || || |||| ||| |||||||| ||| | ||||| ||| Sbjct 56888 TCGGACTCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCTGAC 56947 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || ||||||||||| ||| | || ||| || ||||||| || Sbjct 56948 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACGTTGAGCGACTAC 57007 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || || ||||| ||||| ||||| ||| | ||| | || || Sbjct 57008 AACATCCAGAAGGAGTCGACCCTTCACCTGGTGCTTCGCCTGCGTGGTGG 57057 >seq6 Length=256829 Score = 140 bits (154), Expect = 3e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||||||||| ||||| ||||| || ||||| ||||||| || ||||| Sbjct 245955 ATGCAGATCTTCGTAAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 246014 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| |||| | || || |||| || ||||||||| ||| | ||||| |||||| Sbjct 246015 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 246074 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||||||||| ||| | |||||| || ||||||| || ||| Sbjct 246075 CAGCGCCTGATCTTCGCTGGCAAGCAGCTTGAAGACGGCCGCACGCTGAGCGACTACAAC 246134 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || || || || ||||| || Sbjct 246135 ATCCAGAAGGAGTCTACGCTGCACCTGGTGCT 246166 >seq745 Length=17434 Score = 118 bits (130), Expect = 9e-22 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| || || || ||||| ||||| ||||| || ||||| | ||||| || || Sbjct 11921 AATCATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCC 11980 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||||||| | || | ||||| |||| ||| ||||||||| ||| | ||||| || Sbjct 11981 GTCCGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCATCCCGCCTGA 12040 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||||||| | || ||||| ||||| ||| | || ||| Sbjct 12041 CCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGAC 12080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445734210093840