Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq476 95.1 2e-14 seq1844 89.7 1e-12 >seq476 Length=26050 Score = 95.1 bits (104), Expect = 2e-14 Identities = 181/264 (69%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 94782 GATGCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAAT 94841 |||||||| || || || |||||||||| || || ||| || || ||||| || Sbjct 3349 GATGCCGATACCCCCCGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGAT 3290 Query 94842 ACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGT-GTGA 94900 |||||| ||| || || || | | ||| |||||||| ||||| || || || | | Sbjct 3289 ACCCTCGATGGAGTCGTCCTGCATGGCCAATAGGAAGCAGGAGGACAGCTGCGGACGCGG 3230 Query 94901 CTGTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGAT 94960 | ||||| |||||||| || || | || || || || | | | ||||||||| | Sbjct 3229 C-GTTCCGGCGTTAAACAGCGTCGGCGTCGCGTGCGTGAAGAACTTCTGCGACATGAGCT 3171 Query 94961 CATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAA 95020 | || || || | | | | |||||| | ||| ||||| | ||||| ||||||| Sbjct 3170 CGTACGTCTCCAGCGCGGCCTGGATGTCGGCCTTGTGGATGCCCAGCGCCACGCGCATAA 3111 Query 95021 TCATGTCCTGAGGGCGCTCAACCA 95044 |||| | ||| || ||||| |||| Sbjct 3110 TCATTTGCTGCGGACGCTCCACCA 3087 >seq1844 Length=5900 Score = 89.7 bits (98), Expect = 1e-12 Identities = 368/567 (65%), Gaps = 24/567 (4%) Strand=Plus/Minus Query 35231 CTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGG 35290 ||||| |||||| | |||||| | || || | || || || |||||||||||| Sbjct 2384 CTCACGACCAAGCGCGTGTTCTGGCGCGGCGTGGCCGAGGAGCTGCTGTGGTTCATCAGC 2325 Query 35291 GGCAATACAGACGCCAAAGAATTGGC--CA--AGAAGAAGATACACATCTGGAACGCTAA 35346 ||| | || ||| | | | || || ||||| | || ||||||||| ||| || Sbjct 2324 GGCGACACCAGCGC----GCACTCGCTGCAGCAGAAGGACATCCACATCTGGGACGGCAA 2269 Query 35347 TGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGG 35406 || |||||| || | | |||||||| ||||| | | | ||| | ||| || | || Sbjct 2268 TGCGTCGCGCGAGTATCTGGACAGTCGAGGGCTGCAGGCGCGAGAGGTGGGCGACCTCGG 2209 Query 35407 ACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATA-TGATACCTGTTCTTCCG 35465 ||| || ||||| ||||| ||||| |||||||| || | || || || | ||| Sbjct 2208 ACCGGTCTACGGCTTCCAGTGGCGGCATTTTGGCGCCAAGTACACGGACATG-CATGCCG 2150 Query 35466 ATTATACTGGAAAGGGTATTGATCAATT---GGCCAATATACTAAAGACCCTGAGAGAAA 35522 |||| ||||| |||| | || || | || ||| | ||| ||| | | Sbjct 2149 ATTACACTGGCCAGGGCGTGGACCAGCTCGCGGGGGTTATCCACAAG---CTGCGCACGA 2093 Query 35523 ATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGG 35582 | || || | | || | || |||| |||||||| |||||| | |||| Sbjct 2092 ACCCGACGGACCGCCGCATCGTGCTGTCGGCGTGGAATCCGGCGGATCTCAATGAGATGG 2033 Query 35583 CTCTTCCTCCATGCCACATG-ACTGCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGC 35641 | || || || ||||||||| |||| || || || ||||| | || || | || ||| Sbjct 2032 CGCTCCCGCCGTGCCACATGTTCTGC-CAGTTCTACGTGGCCGACGGCGAGCTTTCCTGC 1974 Query 35642 CAGTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCAT 35699 ||| |||| ||||| || || ||| || | |||||||| |||||||| || | Sbjct 1973 CAGATGTACCAGCGCTCGGCCGACATG--GGACTTGGCGTGCCGTTCAATATCGCTAGCT 1916 Query 35700 ACTCTCTTCTGACTCATCTGATGGC-CAGTATGGTGGGTCTAAAACCGGGAGAGTTTATC 35758 || | | || || | ||| | || ||| ||| || | || || ||||||||| | Sbjct 1915 ACGCATTGCTTACGCGACTGGTTGCGCAG-GTGGCTGGATTGAAGCCTGGAGAGTTTGTT 1857 Query 35759 CTCACTCTTGGTGACGCACACATTTAT 35785 | | | |||| || || ||| | ||| Sbjct 1856 CACGTTATTGGAGATGCCCACGTGTAT 1830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989510753157035