Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq1844 206 2e-48 >seq1844 Length=5900 Score = 206 bits (228), Expect = 2e-48 Identities = 475/709 (67%), Gaps = 41/709 (6%) Strand=Plus/Plus Query 20888 CGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTA 20947 ||| ||||||||||| || | ||||| | | || || || || || || || Sbjct 1773 CGGGAACGGACGCGGTGTTCGAGTAAGCTGCTTCTGGAGCGGCTCGACATGATTCAGATA 1832 Query 20948 AACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGC 21007 |||||||| || || | ||| ||||| ||||| || ||| || | || || || Sbjct 1833 CACGTGGGCATCTCCAATAACGTGAACAAACTCTCCAGGCTTCAATCCAGCCACCTGCGC 1892 Query 21008 GATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTC 21067 | ||| ||| || | |||||||| ||||| || ||||| || || || |||||||| Sbjct 1893 AACCAGTCGCGTAAGCAATGCGTAGCTAGCGATATTGAACGGCACGCCAAGTCCCATGTC 1952 Query 21068 GGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAA 21127 ||| || | |||||||| ||||||||| ||||| || |||||||| ||||| || || Sbjct 1953 GGCCGAGCGCTGGTACATCTGGCAGGAAAGCTCGCCGTCGGCCACGTAGAACTGGCAGAA 2012 Query 21128 AACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAAC 21187 | ||| || || ||||| |||||| ||| ||||| || |||||||| ||| || Sbjct 2013 CATGTGGCACGGCGGGAGCGCCATCTCATTGAGATCCGCCGGATTCCACGCCGACAGCAC 2072 Query 21188 GATGCGCCGAT-CGTGGG--------GCCGCCTGTTAATTAGATCCACCACGTAACGCAG 21238 |||||| || | ||| || || || ||| || | || || || || Sbjct 2073 GATGCGGCGGTCCGTCGGGTTCGTGCGCAGCTTGTGGAT---AACCCCCGCG------AG 2123 Query 21239 CTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATG 21298 ||||||||| ||||| || ||| | ||| | || |||||| || |||||||| Sbjct 2124 CTGGTCCACGCCCTGGCCAGTGTAATCGGCATGCATGTCCGTGTACTTGGCGCCAAAATG 2183 Query 21299 TCTCCACTGGAACCCGTACACCGGCCCCAGATCGC---CCTCGCGGCGGTCCCCGAAGCC 21355 | ||||||||| ||||| ||||| || || |||| |||| | ||| || | |||| Sbjct 2184 CCGCCACTGGAAGCCGTAGACCGGTCCGAGGTCGCCCACCTCTC-GCG---CCTGCAGCC 2239 Query 21356 CTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACG-----CCGCG 21409 || | | ||| | | |||| ||| | | ||||||| || | | | | || Sbjct 2240 CTCGACTGTCCAGATACTCGCGCGACGCATTGCCGTCCCAGATGTGGATGTCCTTCTGCT 2299 Query 21410 GC-GCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGA 21468 || |||| | || ||| ||| ||| ||||| |||||||||| |||||| | | Sbjct 2300 GCAGCGAGTGCGCGCTGGTGTC------GCCGCTGATGAACCACAGCAGCTCCTCGGCCA 2353 Query 21469 CGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAAC---TCGTCCCTGAGGTTAT 21525 |||| | ||| ||||| | ||||| || | ||| || ||| | |||||||||| | Sbjct 2354 CGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGCGGGAACACGTTGTCCCTGAGGCTGA 2413 Query 21526 ATCGGGCCTGAAGCCCGAACACGGACCTGGTGCCCACGCCCGTCCTGTC 21574 | || ||| ||||| || ||| |||||| ||||| | ||| Sbjct 2414 ACCGCATCTGCGCGCCGAAGACCGACAGCGTGCCCGTCCCCGTGCGGTC 2462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427745881494960