Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4292 179 5e-40 seq476 145 1e-29 seq4320 109 8e-19 seq130 107 3e-18 >seq4292 Length=2137 Score = 179 bits (198), Expect = 5e-40 Identities = 582/887 (66%), Gaps = 34/887 (4%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| || ||| | | || ||| | ||| | |||||||| ||||| ||||||| || Sbjct 20 CTGTTCCCGATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAGGCCTCGTTC 79 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||||| ||| ||| | || ||| | ||||| | || |||| || | |||| Sbjct 80 TGGACGGCCGAGGAGCTGGACCTGGTGCACGACCTCAAGGACTGGGCGAACC---TGACG 136 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || | ||||| || || |||| | |||| ||||| || | ||| || || Sbjct 137 GACAACGAGCGGTTCTTCATCAAGCACGTGCTGGCGTTCTTCGCTGCGAGCGACGGTATT 196 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCT-CAA-GAGTTGACCATTCCAGAGGTGTCGT 125232 || ||||| || ||| | || || || ||| || || | || ||||| | Sbjct 197 GTGAACGAGAACCTG--GCCATGAACTTCAGCAATGAAGTGCAGGTGCCCGAGGTCCGCT 254 Query 125233 GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 |||| ||||| ||||| ||| || |||||| | ||| | || ||||||| || | Sbjct 255 GCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACGCCGAGGTGTACTCGCTGCTCA 314 Query 125293 TTGACATGTACATTCGCGAT-CCGCAACGTA--AACACATGCTCTTTAACGCAATCGACA 125349 |||| | |||||| || ||| | | | ||| |||| ||| ||||| | Sbjct 315 TTGATACGTACATCAAGGACGCCGTGGAGAAGGACCACCTGCTGCG---CGCCATCGAGA 371 Query 125350 CGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT 125409 || | |||| | || || || || |||| | | |||| ||| || Sbjct 372 CGATCCCGTGCGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGTGTGT 431 Query 125410 CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-T 125468 | |||||| | || | ||| |||| ||||||||||| |||||||| ||||| ||||| | Sbjct 432 CGTCGTACCCGGAGCGTCTGCTGGCGTTCGCCGCCGTGGAGGGCATTTTCTTCTCGGGCT 491 Query 125469 AGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 || ||| ||||||| ||||||||||||||||| |||||||| || |||| | Sbjct 492 CCTTCTGCT-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTCTCG 550 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGC 125588 |||||| | || || |||||||| | ||| ||||| || || ||| | Sbjct 551 AACGAGCTGATCAGCCGTGACGAGGGTATGCACACGGACTTCGCGTGCCTCATGTACTCC 610 Query 125589 AACTATCTGCGTCCCGAG-TGC---AGATCCAGCGATGAAAAGGTCATCAACATTGTAAC 125644 || ||| | || ||| ||| || ||| || | | | ||||| Sbjct 611 AAG---CTGGTGAACAAGCTGCCGGAGAGCC-GCG-TGCA--------CGAGATTGTGCG 657 Query 125645 CGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC-AGCATGATTG 125703 ||| || ||| ||| || || ||||| | ||| || || || || ||| |||| | Sbjct 658 CGACGCGGTGGTGATCGAGCACGAGTTCGTGCGCGACTCGCTCCCTGTGGAGC-TGATCG 716 Query 125704 GCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACG 125763 ||||||||| ||| |||||| ||||||| ||||| ||||| || ||||| |||||| Sbjct 717 GCATGAACTCGGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTGCTGTACT 776 Query 125764 AGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATAT 125823 | || || | ||||| ||||||| ||||| || || || | ||| || || | Sbjct 777 CGCTGGGTGTGCCAAAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGACATGATCT 836 Query 125824 CACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | || |||| ||||||||||| ||||||||| || |||||||| Sbjct 837 CTCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTAC 883 >seq476 Length=26050 Score = 145 bits (160), Expect = 1e-29 Identities = 390/584 (67%), Gaps = 18/584 (3%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || |||||| | ||| ||| | | || ||||| | ||| ||| | | | | || Sbjct 3392 ACCAACGGCTCCTCCAACGGCATCATCCCCATGCTGCGCGTGTTCAACGACACGGCCCGG 3451 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGC-GCTATAGCCGTCTACTTGGAACCTTG 96925 ||||| ||||||||| || || ||| ||| | ||| ||||| | || || || Sbjct 3452 TACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCAGCT-TCGCCATCTACCTCGAGCCCTG 3510 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC- 96984 |||||| ||||| || || || | || ||||||| ||| ||| || | |||| Sbjct 3511 GCACGCCGACGTGTTCGAGTTCCTGGACCTGCGCAAGAACCACGGCAACGA-GCTGCACC 3569 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACG 97044 | ||| | ||| |||| || || || |||||||| || |||||||||||||||| | | Sbjct 3570 GTGCCCGCGACCTGTTCTACGCGCTGTGGGTGCCCGACCTGTTCATGAAGCGCGTGGAGG 3629 Query 97045 ACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGG 97104 | ||| | ||||| | | |||||| || | | ||||| || | ||| ||||||| Sbjct 3630 CCAACGGCAAGTGGAGTTTGTTCTGCCCCAACGAGGCCCCCGGGCTCTACGAGTGCTGGG 3689 Query 97105 GCGAAGAGTTTGAG-GCCAAGTACACGGC--CTACGAGCAAGAGGGCCG-ATACGTGAGA 97160 | || ||||||||| ||| | ||| | ||||||| |||||||| || ||| Sbjct 3690 GGGACGAGTTTGAGAGCC---TCTACGACAAGTACGAGCGCGAGGGCCGCGCCCGCAAGA 3746 Query 97161 CGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACT 97220 | | || | || | | |||||| |||||| || || ||| | ||||| || Sbjct 3747 CCA-TCAACGCGCAGCAGCTGTGGTTCGCCATCCTGGACGCGCAGATCGAGACGGGCGTG 3805 Query 97221 CCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACC 97280 || | ||| ||||||||||| | | || ||||| |||||| | || | |||||| Sbjct 3806 CCCTTCATGCTCTACAAGGACGCGGCCAACCGCAAGTCCAACCAGCAGAACCTCGGCACC 3865 Query 97281 ATCAAGGGCTC---CAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACG 97337 ||| |||| ||| |||||| || | | |||||| | || || |||||| | Sbjct 3866 ATC---CGCTCCAGCAACCTGTGCTGCGAGGTGATGGAGTACACGTCCCCCGACGAGGTG 3922 Query 97338 GCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGTAGA 97381 || || ||| ||||| || || ||||||||||| || || Sbjct 3923 GCCGTGTGCAACCTGGCCTCCGTGGCGCTGCCCAAGTTCGTGGA 3966 Score = 102 bits (112), Expect = 1e-16 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGT 98099 |||||||| || |||||||| | ||| | | | || || | |||||| | ||| Sbjct 4637 TACAAGACGGTGTGGGAGATCAAGCAGAAGGCAGTACTGGACTTGTCGGCCGACCGCGGT 4696 Query 98100 GTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGT 98159 | ||||||| ||||||||| ||| |||| | || | ||||| || ||| ||| Sbjct 4697 GCCTACATTTGCCAGAGTCAGTCGCTCAACATCCACATCGCCGACCCGACCATCAGCAAG 4756 Query 98160 ATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTA 98215 | || ||||| ||||| ||||| ||||| ||||| |||||||| ||||||||||| Sbjct 4757 CTCACGTCGATGCACTTCTACGCCTGGAAGAAGGGGCTCAAGACCGGCATGTACTA 4812 >seq4320 Length=1636 Score = 109 bits (120), Expect = 8e-19 Identities = 179/253 (71%), Gaps = 14/253 (6%) Strand=Plus/Minus Query 125645 CGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC-AGCATGATTG 125703 ||| || ||| ||| || || ||||| | ||| || || || || ||| | |||| Sbjct 1461 CGACGCGGTGGTGATTGAGCACGAGTTCGTGTGCGATTCGCTGCCTGTGGAGC-TCATTG 1403 Query 125704 GCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACG 125763 ||||||||| ||| |||||| ||||||| ||||| ||||| || || || |||||| Sbjct 1402 GCATGAACTCGGCGCTCATGTGCCAGTACATCGAGTTCGTGGCGGACCGCCTGCTGTAC- 1344 Query 125764 AGTTGATTGGCCG----CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGC 125819 | | ||| || |||||| ||||||| |||||| || || || | ||| || Sbjct 1343 ---TCACTGGGCGTGTCCAAGATCTACAACGTCAAGAACCCGTTCGACTGGATGGACATG 1287 Query 125820 ATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA--CAAACGCT 125877 || || || |||| ||||||||||| || |||||| || ||||||| | || || Sbjct 1286 ATCTCGCTGCAGGGCAAGACCAACTTCTTTGAGAAGCGCGTGGGCGAGTACTCCAAGGC- 1228 Query 125878 ACGGTGTCGGTGT 125890 ||| |||||||| Sbjct 1227 -CGGCGTCGGTGT 1216 >seq130 Length=56142 Score = 107 bits (118), Expect = 3e-18 Identities = 215/317 (68%), Gaps = 4/317 (1%) Strand=Plus/Minus Query 127443 GAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGG 127502 ||| ||||| ||||||||||||||| |||||| || || |||||||| | ||||||| Sbjct 40402 GAAGCCGTGGGTCAGGTGGCCTCCGCTGGGCAGGTCCAGGCCCATGATGCGGTCGTGCGG 40343 Query 127503 TTTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACA 127562 | | | |||||||||||||||||||| |||||||||||| || || || Sbjct 40342 GCGCAGCAGCGCCGTGTACACGGCAAAGTTGGCGGGCGAGCCCGAGTAGGGCTGCACGTT 40283 Query 127563 CACTCCCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAG 127622 || ||||| | | ||| || | | || | || |||||||| || | Sbjct 40282 GACGCCCCACTTGTCGGCGTCCAGGCCGTAGGCCGTCAGCGCGCGCTGCTGGCACAGGAT 40223 Query 127623 TTCGATGCGATCGATAAACTCGTTACCACCATAGTA--TCGCTTTCCGGGCCTACCCTCC 127680 ||||| ||||| | |||||| || || ||||| ||| ||| ||| ||||| Sbjct 40222 CTCGATCTTGTCGATGATCTCGTTGCCGCCGTAGTAGCGCGCGTTC--GGCAGGCCCTCG 40165 Query 127681 GAGTACTTGTTGATGAGACACGAACTCATGCATTCTCGCACCGGTAGAGTGGTAAAGTTT 127740 | |||||||||| | || ||||| | || ||| || || | | | || ||||| Sbjct 40164 GCGTACTTGTTGGTCAGGCACGAGCCCAGGCAGTCCATGACGGCGCGCGACGTGAAGTTC 40105 Query 127741 TCCGATGCGATCAACTC 127757 ||||| ||||| | ||| Sbjct 40104 TCCGAGGCGATGAGCTC 40088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741005686262520