Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_005261.2 Length=137821 Score E Sequences producing significant alignments: (Bits) Value seq1240 125 6e-24 >seq1240 Length=9922 Score = 125 bits (138), Expect = 6e-24 Identities = 175/245 (71%), Gaps = 9/245 (4%) Strand=Plus/Plus Query 99522 GTGCGAGCCCGGCGCCCCGCTCCGCACGGTGAGCGAGGTGTTGAGCAGCAGCACGCCGCG 99581 ||| ||| |||| | |||| || ||||| ||| ||||||||||||||||||||| | Sbjct 2281 GTGAGAGTTCGGCTCTCCGCGGCGGACGGTAAGCACGGTGTTGAGCAGCAGCACGCCCTG 2340 Query 99582 GCGCGCCCAGGCCTCCAGGCAGCCGTGCTGCGGCCGCGGGGTCCCGGGGAAGTTCTTCTG 99641 ||| |||| ||||||||||||| ||| || | | || | |||| | Sbjct 2341 GCGGCTCCAGCAGGACAGGCAGCCGTGCGACGGGCGGTCGATGCCCACGTCGTTCAT--- 2397 Query 99642 CACGGCCGCGT---AGATGTTCTGGAGGCTGGGCGGGATCGGAACGCCGCGGTTCACGCT 99698 |||| | | ||||||||| |||||||||||| ||| |||||| || ||| Sbjct 2398 ---GGCCTCCTTGAAGATGTTCTTGAGGCTGGGCGGCGGCGGGACGCCGTGGCGCACCGA 2454 Query 99699 GAAGGCCAGGCCGTGGGCCTGCCCGTGGCTGTGGTAGGGGTCCTGGCCCAGGATGACGAC 99758 |||| ||| |||||||||||| | | ||| || ||||||||||||||||| || || Sbjct 2455 GAAGCTCAGTCCGTGGGCCTGCTGCGGCCCGTGATACGGGTCCTGGCCCAGGATCACCAC 2514 Query 99759 CTTGA 99763 ||||| Sbjct 2515 CTTGA 2519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440867361566520