Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq1844 123 2e-23 seq4 93.3 3e-14 >seq1844 Length=5900 Score = 123 bits (136), Expect = 2e-23 Identities = 370/564 (66%), Gaps = 29/564 (5%) Strand=Plus/Plus Query 25413 AGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGG 25472 ||||| ||| ||||| || || |||| ||| || ||||| || ||||| | | ||| Sbjct 1798 AGCTGCTTCTGGAGCGGCTCGACATGATTCAGATACACGTGGGCATCTCCAATAACGTGA 1857 Query 25473 ACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAG 25532 ||||||||||| || | | || | || | || | || ||| || | |||| Sbjct 1858 ACAAACTCTCCAGGCTTCAATCCAGCCACCTGCGCAACCAGTCGCGTAAGCAATGCGTAG 1917 Query 25533 CTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACA 25592 || ||||| || || || || || | ||||||| | |||| | |||||| | ||| || Sbjct 1918 CTAGCGATATTGAACGGCACGCCAAGTCCCATGT-CGGCCGAGCGCTGGTACATCTGGCA 1976 Query 25593 CGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTAT 25652 || ||||| ||||| |||||| ||||| || | ||| |||||| || || || || Sbjct 1977 GGAAAGCTCGCCGTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCAT 2036 Query 25653 AAGGCCCA---AG-TCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGT-CTTCTGGG 25707 | || || || || ||||| || ||| | ||||| | || | || || Sbjct 2037 ----CTCATTGAGATCCGCCGGATTCCACGCCGACAGCACGATGCGGCGGTCCGTCGGGT 2092 Query 25708 TTGTCC----CT----GATAAGATCCGCGGTGTTTTGCAGCTGATCCACCCCCATCCCCG 25759 | || | || ||||| ||||| ||||| ||||| ||| || | Sbjct 2093 TCGTGCGCAGCTTGTGGATAACCCCCGCG---------AGCTGGTCCACGCCCTGGCCAG 2143 Query 25760 AGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACA 25819 ||| || || |||||||||||||| || || |||| || ||||||||| ||||| | Sbjct 2144 TGTAATCGGCATGCATGTCCGTGTACTTGGCGCCAAAATGCCGCCACTGGAAGCCGTAGA 2203 Query 25820 CCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCC-CTCTTATCCAAAAAGTCTCTG 25878 ||||||| ||||| || | || | | || ||||| | | |||| | | || | Sbjct 2204 CCGGTCCGAGGTCGCCCACCTCTC-GCGCCTGCAGCCCTCGACTGTCCAGATACTCGCGC 2262 Query 25879 GAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGAC 25938 || ||||| |||||||||| | | |||||| ||| | | | | ||| Sbjct 2263 GACGCATTGCCGTCCCAGATGTGGATGTCCTTCTGCTGCAGCGAGTGCGCGCTGGTGTCG 2322 Query 25939 CCTCTGACGAACCACAGCAGCTCC 25962 || |||| |||||||||||||||| Sbjct 2323 CCGCTGATGAACCACAGCAGCTCC 2346 >seq4 Length=136950 Score = 93.3 bits (102), Expect = 3e-14 Identities = 203/304 (67%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 40693 CCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTCGC 40752 |||||||| | || || ||||| | ||||||| | |||||| || | | ||| | Sbjct 14539 CCACCTCCTGCACCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTCCC 14598 Query 40753 CCCTCTCGACCCGAAAAGGGTCGCACCCAAAGTTAAACAATATGACGCCGAGGTTGCCCC 40812 | | || || | || ||| | | ||| |||| || ||||| | |||||| | Sbjct 14599 CGCGCTGCACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCCGC 14658 Query 40813 TGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTCCAGGGCCAGGCCGG 40872 |||||||| ||| | ||| || || || ||| || || || | || |||||||| | Sbjct 14659 GGTAGTCGGCGTCGATCACGCCCGCGCCCGTGTCGATGAACTTCTTGAGCGCCAGGCCAG 14718 Query 40873 ACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTTACGGCCAGGTCCGTCTTTA 40932 | | || ||||| | ||||| ||| | ||||| || ||||||||||||| | Sbjct 14719 AGCGCGGCGCCACGCGCGCGTAGCAGCCGGCGGGCACGGCGACCACCAGGTCCGTCTTGA 14778 Query 40933 CCAGGGCCCTGCCAAAGGAGGGGACCACGACCGGGTAAGCGGCCGCTAGGTCGTAACCCG 40992 | ||| || |||| | ||||| |||| | ||| ||||||| ||||| |||| Sbjct 14779 CGAGGCCCTTGCCGCCCGCGGGGATCACGGCGTCGTAGGCGGCCGACAGGTCCAGGCCCG 14838 Query 40993 CGGC 40996 |||| Sbjct 14839 CGGC 14842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340113651868221