Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq361 136 6e-28 seq48 131 3e-26 seq115 109 9e-20 >seq361 Length=31756 Score = 136 bits (150), Expect = 6e-28 Identities = 178/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 |||||||||||| |||| | || ||||| || |||||||| || ||||||||||| || | Sbjct 6046 CGCTAAGCGTCACCGCAAGGTC-CTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 5988 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| || || ||||| || || |||||| |||| || | |||| || |||| Sbjct 5987 TCCGCCGTCTCGCACGCCGTGGCGGTGTGAAGCGTATCTCCGGCCTCATCTACGAGGAGA 5928 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| | |||||| ||| ||| |||| || | || ||| || | Sbjct 5927 CCCGCGGTGTCCTCAAGGTGTTCCTCGAGAACGTCATCCGCGACTCGGTCACCTACACGG 5868 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| || || || || || ||||||| |||| || || | || || || | Sbjct 5867 AGCACGCTCGCCGCAAAACCGTGACGGCCATGGACGTCGTGTACGCCCTCAAGCGCCAGG 5808 Query 16671 GCCG 16674 |||| Sbjct 5807 GCCG 5804 >seq48 Length=76613 Score = 131 bits (144), Expect = 3e-26 Identities = 177/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 |||||||||||| |||| | || ||||| || |||||||| || ||||||||||| || | Sbjct 42441 CGCTAAGCGTCACCGCAAGGTC-CTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 42383 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| || || ||||| || || |||||| |||| || | |||| || |||| Sbjct 42382 TCCGCCGTCTCGCACGCCGTGGCGGTGTGAAGCGTATCTCCGGCCTCATCTACGAGGAGA 42323 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| | |||||| ||| ||| || | || | | ||| || | Sbjct 42322 CCCGCGGTGTCCTCAAGGTGTTCCTCGAGAACGTCATTCGCGACTCGGTGACCTACACGG 42263 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| || || || || || ||||||| |||| || || | || ||||| | Sbjct 42262 AGCACGCTCGTCGCAAAACCGTGACGGCCATGGACGTCGTGTACGCCCTCAAGCGTCAGG 42203 Query 16671 GCCG 16674 |||| Sbjct 42202 GCCG 42199 >seq115 Length=58975 Score = 109 bits (120), Expect = 9e-20 Identities = 172/244 (70%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | || || || || |||||||| || ||||||||||| || | Sbjct 3807 CGCCAAGCGTCACCGCAAGGTC-CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCCA 3749 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || || ||||| ||||| || |||||||| |||| || | |||| || |||| Sbjct 3748 TCCGCCGCCTTGCTCGCCGTGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGA 3689 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| ||||||| ||| ||| |||| || | | || || | Sbjct 3688 CGCGCGGCGTCCTCAAGGTCTTCCTGGAGAACGTCATCCGCGACTCCGTGACGTACACGG 3629 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || ||||| || || ||||||| |||| || || | || || || | Sbjct 3628 AGCACGCGCGCCGCAAGACCGTGACGGCCATGGACGTCGTGTACGCGCTCAAGCGCCAGG 3569 Query 16671 GCCG 16674 | || Sbjct 3568 GACG 3565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79069918048461