Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq476 96.9 4e-15 >seq476 Length=26050 Score = 96.9 bits (106), Expect = 4e-15 Identities = 426/667 (64%), Gaps = 8/667 (1%) Strand=Plus/Minus Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63256 ||||| |||| ||| ||| || ||||| || || || || | ||| || || || Sbjct 3643 CCACTTGCCGTTGGCCTCCACGCGCTTCATGAACAGGTCGGGCACCCACAGCGCGTAGAA 3584 Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63316 || || | || | || |||||| || ||||| || || |||||| | | Sbjct 3583 CAGGTCGCGGGCACGGTGCAGCTCGTTGCCGTGGTTCTTGCGCAGGTCCAGGAACTCGAA 3524 Query 63317 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACT-CCAGGCCGTTTGTTTCCTC 63375 | || | ||||| || || | ||| ||||| | | || || || ||| || | Sbjct 3523 CACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCGA-AGCTGCCCTTGCGCTTGCCGCCGC 3465 Query 63376 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG 63435 |||| || | ||| | || |||| || | || | || ||| || || || ||||| | Sbjct 3464 CCTGGTCCACGTACCGGGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATGCCGTTGG 3405 Query 63436 ATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT--TGATAG 63493 | || ||||| ||| || ||||| |||||||||| || || |||| Sbjct 3404 AGGAGCCGTTGGTGCCGCGAATGTAGCTGTTGGTGGCACGAATGTTGTGCATGCTGATG- 3346 Query 63494 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACC 63553 || || ||||| ||| || ||||| | ||||| | || | ||||||||||||||| Sbjct 3345 -CCGATACCCCCCGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGATACC 3287 Query 63554 CTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63613 ||| ||| || || |||| | ||| || ||| |||| || |||| || Sbjct 3286 CTCGATGGAGTCGTCCTGCATGGCCAATAGGAAGCAGGAGGACAGCTGCGGACGCGGCGT 3227 Query 63614 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 63673 ||| || ||||| | || || | |||||||| || | || | || | || | ||| Sbjct 3226 TCCGGCGTTAAACAGCGTCGGCGTCGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGTA 3167 Query 63674 CGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACA 63732 |||||| | || | | || || | ||| || || || | || || ||||| | || Sbjct 3166 CGTCTCCAGCGCGGCCTGGATGTCGGCCTTG-TGGATGCCCAGCGCCACGCGCATAATCA 3108 Query 63733 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 63792 | ||||| || | || || | |||| ||||| || | |||| || | | Sbjct 3107 TTTGCTGCGGACGCTCCACCACCTTGCCGTTTACGCGGAAGAGGTAGCCGCGCTCGAGTG 3048 Query 63793 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTT 63852 ||||||| || || |||| ||| ||||| || |||| || || |||||||||| | Sbjct 3047 TTTTAAACCCGAAGTAGTCGTACTCGAAGTCGCGGTCGTGGATGATGGCCGAGTTGAGCT 2988 Query 63853 TATCCTT 63859 ||||| Sbjct 2987 CGTCCTT 2981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622902215425320