Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq476 338 2e-87 seq61 95.1 3e-14 >seq476 Length=26050 Score = 338 bits (374), Expect = 2e-87 Identities = 642/941 (68%), Gaps = 8/941 (1%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||||||||| ||||| || ||| || || ||||| | ||| ||| |||| || Sbjct 3191 TTCACGCACGCGACGCCGACGCTGTTTAACGCCGGAACGCCGCGTCCGCAGCTGTCCTCC 3250 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | ||| ||||||| |||||||||||||||| |||||| || ||| | Sbjct 3251 TGCTTCCTATTGGCCATGCAGGACGACTCCATCGAGGGTATCTATGACACGCTCAAGCAG 3310 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || || || |||||| || || || || || | || ||||| ||||||| Sbjct 3311 TGCGCCTGCATCTCCAAGTGGGCGGGGGGTATCGGCATCAGCATGCACAACATTCGTGCC 3370 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 ||||| |||||||||||||| || | ||| || || | | |||||||| || Sbjct 3371 ACCAACAGCTACATTCGCGGCACCAACGGCTCCTCCAACGGCATCATCCCCATGCTGCGC 3430 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 ||||| || | || || ||||||| |||||||| || || |||||||| || || Sbjct 3431 GTGTTCAACGACACGGCCCGGTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCAGCTTC 3490 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 || || || |||||||| || ||||| | || ||||| || || || || || ||| Sbjct 3491 GCCATCTACCTCGAGCCCTGGCACGCCGACGTGTTCGAGTTCCTGGACCTGCGCAAGAAC 3550 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || ||| ||||| || || |||||||| || || ||||| | |||| Sbjct 3551 CACGGCAACGAGCTGCACCGTGCCCGCGACCTGTTCTACGCGCTGTGGGTGCCCGACCTG 3610 Query 363967 TTTATGAAGCGCGTGGAGGC---AGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGT 364023 || ||||||||||||||||| || ||| ||| | || ||||| |||| Sbjct 3611 TTCATGAAGCGCGTGGAGGCCAACGGCAAG---TGGAGTTTGTTCTGCCCCAACGAGGCC 3667 Query 364024 CCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCG 364083 || || || | ||| ||||| ||||| | || || ||||| ||||| || Sbjct 3668 CCCGGGCTCTACGAGTGCTGGGGGGACGAGTTTGAGAGCCTCTACGACAAGTACGAGCGC 3727 Query 364084 GAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCG 364143 ||||| || || ||||| || ||| ||| |||| ||||| |||||| |||| || Sbjct 3728 GAGGGCCGCGCCCGCAAGACCATCAACGCGCAGCAGCTGTGGTTCGCCATCCTGGACGCG 3787 Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAAC 364203 ||||| ||||| || |||| ||| | ||||| || || |||||||||||||||| Sbjct 3788 CAGATCGAGACGGGCGTGCCCTTCATGCTCTACAAGGACGCGGCCAACCGCAAGTCCAAC 3847 Query 364204 CAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||| |||| || || || | |||||||| || |||| | || || ||||| Sbjct 3848 CAGCAGAACCTCGGCACCATCCGCTCCAGCAACCTGTGCTGCGAGGTGATGGAGTACACG 3907 Query 364264 GCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAA 364323 | ||||||||| ||||| || ||||| || || | ||||| || ||| || | Sbjct 3908 TCCCCCGACGAGGTGGCCGTGTGCAACCTGGCCTCCGTGGCGCTGCCCAAGTTCGTGGAC 3967 Query 364324 GATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTC 364383 || || || ||| ||||| | || || || || ||| | | || |||| ||| Sbjct 3968 GACGGCGTGTTCGACTACCAGAAACTCTACGAGGTCACCAAGGTGGTGACCCGCAACCTC 4027 Query 364384 GACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGC-GTTCTAATATGCG 364442 ||||||| |||||| || || || || | | | || || || || || ||||| Sbjct 4028 AACAAGGTCATCGACGTCAACTACTACCCCGTGGCCG-AGGCGCGCAAGTCCAACATGCG 4086 Query 364443 TCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACG 364483 || ||||| || || | || || ||||||||||| |||| Sbjct 4087 CCACCGCCCCATCGGCATCGGCGTCCAGGGCCTCGCGGACG 4127 >seq61 Length=78930 Score = 95.1 bits (104), Expect = 3e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 145537 CTTCATCTGAAAATCCAGTTCCGATCTTGCATACACTTTGGAACACTTCTTCGTCTGGAT 145596 ||||||| || || ||||| || | ||| | ||||||| || ||| |||| Sbjct 59580 CTTCATCCGACAAGCCAGTGCCCAGCTTCGTAATGGGCTGGAACATCTCGGTGTCCGGAT 59639 Query 145597 CATACACCGCAAGAAGGTATGCACCATATACACCAGTACGTTTTCCGCGACCGGTATACC 145656 |||| ||||| | ||| || || || ||||||||||| || || |||||| || Sbjct 59640 CATAGCATGCAAGCAAGTACGCGCCGTAGACACCAGTACGCTTGCCCCGACCGTGGAACG 59699 Query 145657 CCGCAATTGGTACAAGATCACAACTATCACCCATTCCGGCAAGATAATCCTTTTTAAGTT 145716 | | || || || |||||| | ||||| || || | ||||||||||| || | || Sbjct 59700 CACCGATCGGGACCAGATCAGCAGAGTCACCAATGCCATCGAGATAATCCTTCTTCAATT 59759 Query 145717 TTAGCCAATTGAGAGAACGTTTCGATGGTTCATAG 145751 | ||||| ||| | ||||| |||| ||||||||| Sbjct 59760 TGAGCCATTTGTGTGAACGGTTCGCAGGTTCATAG 59794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303257128617614