Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq476 248 8e-61 seq45 145 7e-30 seq6 136 4e-27 seq745 107 2e-18 seq93 87.8 2e-12 >seq476 Length=26050 Score = 248 bits (274), Expect = 8e-61 Identities = 947/1462 (65%), Gaps = 56/1462 (4%) Strand=Plus/Minus Query 145051 GTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGT 145110 ||||| || |||| | ||||| ||||||| |||||| || |||| ||| ||||| Sbjct 4519 GTACTTGTTCACGATCGTGAACTCACCGGCCAGCACACGGCGGTTGTACATGTTGGACGT 4460 Query 145111 GAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTA 145170 | |||| || | |||||||| ||||| ||||| || || || | || ||||||||| Sbjct 4459 GTAGGGCTCGATGGACTCGTTGTTGCCTAGGATCTGGGCCGTGGAAGCCGTGGGCATGGG 4400 Query 145171 CGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCA 145230 ||||||| | || ||||| || ||||| || | || ||||| |||| |||| Sbjct 4399 GGCCACCAGCAGCGAGTTGCGAAGACCGTGTTTGACCACGTTCTCCTTGAGCGCCGCCCA 4340 Query 145231 ATCCCATAG---CGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCT 145287 | ||| || ||| | ||| | ||| ||||||||||| |||| || || |||| ||| Sbjct 4339 GTTCCAGAGACCCGAGGACGGGGTGACGCCCCACATGTCGAACTGGAAGATCCCCTTGCT 4280 Query 145288 GGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTT--TTGGCGAGCTCGCAACTC 145345 ||| || ||| || || | ||| | || || | ||||| | ||| | Sbjct 4279 GGCCGGCGAGCCCTGGAACGTCTCGTA--GGGGCCGAGCTCCTTGGCAATCTCCATGGAC 4222 Query 145346 GCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCA 145405 | ||| | ||| || | || || |||||| || | | |||||||| || | Sbjct 4221 GTCTCGACGGCGGCGTAGTAGATCGTCTCGAAGATGTTCTTGTTGAGCTCGCGGGCCTGC 4162 Query 145406 TCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACG 145465 ||||||||| ||| | || || | || || || ||||| ||||| | || | | Sbjct 4161 TCGCTCTCGAACGCGTAGTTCATGAGGATGAAGGCGTCCGCGAGGCCCTGGACGCCGATG 4102 Query 145466 CCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATA-TCGATTACG 145524 |||||||| || || ||||||| | | | |||| | | || || | | | || Sbjct 4101 CCGATGGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCGGCCACGGGGTAGTAGTTGAC- 4043 Query 145525 GTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCA-ACTTT-TCA 145582 |||||| | || || | ||| || || ||||| || | | || | | ||| | Sbjct 4042 GTCGATGACCTTGTTGAGGTTGCGGGTCACCACCTTGGTGACCT--CGTAGAGTTTCTGG 3985 Query 145583 AAGTCAAACCGAGCCTCGTCAACGACC--ACACAGCTATTGACGGCGATCGACGCCAAAT 145640 |||| ||| | ||||| |||| | |||| || | || |||| | Sbjct 3984 TAGTCGAACACGCCGTCGTCCACGAACTTGGGCAGC--------GCCACGGAGGCCAGGT 3933 Query 145641 TACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTAC 145700 | || || ||| ||| |||| | |||| | | | |||| ||||| ||||| Sbjct 3932 TGCACACGGCCACCTCGTCGGGGGACGTGTACTCCATCACCTCGCAGCACAGGTTGCTGG 3873 Query 145701 ATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCA 145760 | |||||| || || || ||||| || || | |||| ||||||||||||||||| Sbjct 3872 AGCGGATGGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGGCCGCGTCCTTGTAGAGCA 3813 Query 145761 TGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT--AAAACGGTGCAAGTCCTGCGC 145818 || | || |||| ||||| | ||||| |||| ||| ||| || | |||||| Sbjct 3812 TGAAGGGCACGCCCGTCTCGATCTGCGCGTCCAGGATGGCGAAC--CACAGCTGCTGCGC 3755 Query 145819 ----ACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAA 145874 | | | ||| || ||||||||| ||||| || |||||| ||||| Sbjct 3754 GTTGATGGTCTTGC----GGGCGCGGCCCTCGCGCTCGTACTTGTCGTAGAGGCTCTCAA 3699 Query 145875 ACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATA 145934 || || || |||| ||| | || ||||| || |||||| || | || ||| Sbjct 3698 ACTCGTCCCCCCAGCACTCGTAGAGCCCGGGGGCCTCGTTGGGGCAGAACAAACTCCACT 3639 Query 145935 CGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGT 145994 ||||||||| | ||||||| ||| |||| || ||||||||||||||||| | || || Sbjct 3638 TGCCGTTGGCCTCCACGCGCTTCATGAACAGGTCGGGCACCCACAGCGCGTAGAACAGGT 3579 Query 145995 CGC--GCGCTTTGCAATCCTCAGCACCCATGTTTC--GCTTCAAATTAAGCACACT-ATA 146049 ||| || | |||| ||| | || || ||| || || | || | ||| | Sbjct 3578 CGCGGGCACGGTGCA--GCTC-GTTGCCGTGGTTCTTGC-GCAGGTCCAGGA-ACTCGAA 3524 Query 146050 GATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTT---GCCACC 146106 | ||| |||||||| || || | |||| ||||| | || || || || ||| || Sbjct 3523 CACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCGAAGCTGCCCTTGCGCTTGCCGCCGCC 3464 Query 146107 CTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGC 146166 ||||||||||| || || ||| ||| || ||||||| |||||| || |||| ||| Sbjct 3463 CTGGTCCACGTACCGGGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATGCCGTTGGA 3404 Query 146167 TACGCCGTTCGT----AGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCA 146222 |||||| || || | || ||| || | || | || | | || | | | Sbjct 3403 GGAGCCGTTGGTGCCGCGAATGTA-GCTGTTG--GTGGCA-CGAATGTTGTGCATGCTGA 3348 Query 146223 CGCCGAGACCGCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGC 146282 ||||| ||| || | ||||||| || |||||| | |||||| || ||||| | Sbjct 3347 TGCCGATACCCCCCGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGATAC 3288 Query 146283 CGTCAATGCTATCGCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCG 146342 | || ||| ||| | ||| | | || ||||| ||| ||| ||||| ||||| Sbjct 3287 CCTCGATGGAGTCGTCCTGCATGGCCAATAGGAAGCAGGAGGACAGCTGCGGACGCGGCG 3228 Query 146343 TCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGAT 146402 | || || |||| |||||| |||||||||| || | || | ||| | | | Sbjct 3227 TTCCGGCGTTAAACAGCGTCGGCGTCGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGT 3168 Query 146403 ACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCA 146462 |||| || | ||| | || |||||| | || ||||||| || |||||||| | || Sbjct 3167 ACGTCTCCAGCGCGGCCTGGATGTCGGCCTTGTGGATGCCCAGCGCCACGCGCATAATCA 3108 Query 146463 TGTGTTGGGGCCGCTCCGCCAC 146484 | || || || |||||| |||| Sbjct 3107 TTTGCTGCGGACGCTCCACCAC 3086 >seq45 Length=78880 Score = 145 bits (160), Expect = 7e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| || ||||| | || | |||||||||||| || |||||||| ||||| Sbjct 57058 GCCACCACGCAGGCGAAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCT 56999 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || || Sbjct 56998 CAACGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 56939 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| |||||||||||| | | || | | || | | ||| | Sbjct 56938 GATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 56879 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| | || | || || ||||| || || || ||||| |||||||| Sbjct 56878 GTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 56831 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| ||||| | || | ||||||||||| || |||||||| |||||| Sbjct 57285 CCGCCACGAAGACGAAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTC 57226 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 57225 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 57166 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| |||||||||||| | | || | | || | | ||| | | Sbjct 57165 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 57106 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | || || ||||| || || || ||||| ||||||||| Sbjct 57105 TCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 57058 >seq6 Length=256829 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||||||||| | || | || |||||||| || |||||||| ||||| Sbjct 246182 GCCACCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 246123 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||| || ||||||||||| ||| |||| | ||||||||||| || || Sbjct 246122 CAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGG 246063 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| || |||||||| | | || | | || | | ||| | Sbjct 246062 GATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 246003 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||||| || | ||| || || || || || |||||||| |||||||| Sbjct 246002 GTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTTACGAAGATCTGCAT 245955 >seq745 Length=17434 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| || | ||||| |||||| ||||||||||| ||| ||| Sbjct 12114 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 12055 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | || ||||||||||| || ||||| || || ||||| |||||||||||||| | | Sbjct 12054 TCAAGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 11995 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | | |||| | ||| | ||| | || | ||| || || || || || || || | Sbjct 11994 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 11935 Query 131225 AAATCTGCATGA 131236 | |||||||||| Sbjct 11934 AGATCTGCATGA 11923 >seq93 Length=65012 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||||||| | || | || |||||| || |||||||| || Sbjct 59778 CCACCACGCAGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAG 59719 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | ||||||||||| || ||| Sbjct 59718 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 59659 Query 131128 ATTCCT 131133 |||||| Sbjct 59658 ATTCCT 59653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471978714775680