Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq6 107 2e-18 seq45 104 2e-17 seq745 82.4 6e-11 >seq6 Length=256829 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| |||||||| |||||||| || |||||||||||| | Sbjct 246181 CCACCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 246122 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | |||| || | || ||||| || | || || ||||| ||||| || Sbjct 246121 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGG 246062 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| ||| | ||||||||| | | | | | ||| |||||| Sbjct 246061 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 246002 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| || || |||||||| || || || |||||||| Sbjct 246001 TCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTTACGAAGATCTGCAT 245955 >seq45 Length=78880 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || |||||||||||| || || | ||||| Sbjct 57042 AGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAACGTGCGGCCGTCC 56983 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || ||||| || | || || ||||| ||||| || | |||||| ||||| Sbjct 56982 TCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCT 56923 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 |||| ||||||||| | | | | | ||| |||||| |||| ||||| || Sbjct 56922 TGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTC 56863 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || ||||||||||| || || || |||||||| || Sbjct 56862 TTGCCGGTCAGCGTCTTCACGAAGATCTGCATCTT 56828 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || |||||||||||| || || | ||||| Sbjct 57270 AGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCC 57211 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || ||||| || | || || ||||| ||||| || | |||||| ||||| Sbjct 57210 TCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCT 57151 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 |||| ||||||||| | | | | | ||| |||||| |||| ||||| || Sbjct 57150 TGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTC 57091 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||||||||| || || || |||||||| Sbjct 57090 TTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 57059 >seq745 Length=17434 Score = 82.4 bits (90), Expect = 6e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 16746 CCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAA 16805 |||| || ||||||||||| | | || | ||||||| | || ||||| || | | Sbjct 12114 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 12055 Query 16806 TAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGC 16865 | | ||||| ||||| || | |||||| ||||| |||| |||||| || | | Sbjct 12054 TCAAGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 11995 Query 16866 CCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAA 16925 | | ||||| |||||| |||| |||||||| || || ||||| || || |||| Sbjct 11994 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 11935 Query 16926 AAATCTGCAT 16935 | |||||||| Sbjct 11934 AGATCTGCAT 11925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405059478893230