Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq457 102 1e-16 seq1033 84.2 3e-11 >seq457 Length=26735 Score = 102 bits (112), Expect = 1e-16 Identities = 147/203 (72%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 126178 TTGGTGTAAATGTAGCGGGGAGCTG-CCGAATCCTTGCCTCCCTCCAACCGCGTGCCAAA 126236 |||||| |||| || || | |||| ||| ||||||||| ||| ||| ||||| ||||| Sbjct 15048 TTGGTGAAAATATAACGTGC-GCTGGCCGCATCCTTGCCGCCCATCAAACGCGTACCAAA 15106 Query 126237 CTGACCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTT 126296 ||||||| |||| || | || ||||||||| ||| ||||| ||||| || | || Sbjct 15107 CTGACCGATCGGCGACAGGAGGTGGACATTGTTGCTTCCAACAAAATCCTGGGCCATGTT 15166 Query 126297 GACAAT--GGTCTCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCACG 126354 ||||| || ||| | ||||||||||||| | ||| | | ||||||| || Sbjct 15167 TACAATACAACCTTGCAAA--CTCTGCTCGCCGTGGTGGTACGCAGAGTGCTCGGAGACA 15224 Query 126355 TAGCCGCTCAGCTGCGCAACCTT 126377 ||||| ||| ||||| ||||| Sbjct 15225 TAGCCAGCCAGTTGCGCCACCTT 15247 >seq1033 Length=12507 Score = 84.2 bits (92), Expect = 3e-11 Identities = 176/259 (68%), Gaps = 10/259 (4%) Strand=Plus/Plus Query 15398 ATATTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCAC 15457 || || || ||||| |||| ||| || || || || || ||||| | |||||||| ||| Sbjct 5440 ATCTTCATCGGACCCACGTTCTACCAGCGCCTGAAGCATATGGTCGACGACAAGATCCAC 5499 Query 15458 GCGCGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGA--TCGC 15515 |||| |||| || | ||||||| ||| |||||||||| ||||| |||| Sbjct 5500 TCGCGCTCGCGTGGTCCCGTGACGATGCTGACGCGCCAGCCCATGGAAGGTCGTGCTCGC 5559 Query 15516 AAGGCGGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGT---GCACGGCG 15572 ||| |||| || || | ||||||||||| || || |||| | ||||||| Sbjct 5560 GAGG--GTGGTCTGCGTATGGGAGAGATGGAGCGCGATTG---TCTGATCTCGCACGGCT 5614 Query 15573 CCACCCAATTCCTCAACGAGCGCATGTTTCTCAACAGTGACCCGTTCCAGATTGACGTGT 15632 | || | ||||||| || ||| |||| |||| ||| ||| || | |||||| Sbjct 5615 CGGCCAACTTCCTCATGGACCGCCTGTTCGCCAACTCGGACGCGTACCGCGTGCACGTGT 5674 Query 15633 GCAAAGACTGCGGCATGAT 15651 || | |||||| || || Sbjct 5675 GCGATATCTGCGGTATCAT 5693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611347849855200