Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq745 100 2e-16 seq45 96.9 3e-15 >seq745 Length=17434 Score = 100 bits (110), Expect = 2e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| || || ||||| | || Sbjct 11925 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 11984 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | | ||| || |||| || ||||| || ||||||||||| || || || || || Sbjct 11985 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 12044 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || |||||||| ||| | ||||| |||||| |||| || |||||| Sbjct 12045 CAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAAC 12104 Query 22399 ATTCAAAA 22406 || || || Sbjct 12105 ATCCAGAA 12112 >seq45 Length=78880 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || || || | ||||| || ||| |||| || || ||||| | Sbjct 56828 AAGATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCG 56887 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || | | ||| | | || || ||||| |||||||||||||| || || || || Sbjct 56888 TCGGACTCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCTGAC 56947 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || || ||||| ||| | ||||| |||||| | ||| ||| Sbjct 56948 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACGTTGAGCGACTAC 57007 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| || || || || ||| Sbjct 57008 AACATCCAGAAGGAGTCGACC 57028 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || ||| |||| || || ||||| | | Sbjct 57059 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 57118 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | | || || ||||| |||||||||||||| || || || || || Sbjct 57119 GACTCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCTGACCAG 57178 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| ||| | ||||| |||||| | ||| |||||| Sbjct 57179 CAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACGCTGAGCGACTACAAC 57238 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 57239 ATCCAGAAGGAGTCGAC 57255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419698448132005