Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq467 192 1e-43 seq4292 167 5e-36 seq4320 131 3e-25 seq457 113 9e-20 seq1022 102 2e-16 seq706 87.8 4e-12 seq2411 84.2 4e-11 >seq467 Length=26285 Score = 192 bits (212), Expect = 1e-43 Identities = 669/1024 (65%), Gaps = 39/1024 (4%) Strand=Plus/Minus Query 279351 GATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTACC 279410 || ||||| |||| || |||||||| || || ||||| | ||||||||| ||| || Sbjct 14160 GACCTGTGCAACTGCGAGTTCTCGCTTGCCTACGGTGGTATGATTCTGCTGAACAACGCC 14101 Query 279411 CGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAG 279470 || || | ||||||||||| |||| || ||||| ||| ||||| || |||||| Sbjct 14100 CGTCTTCGCCTCAAGCGTGGCCACCGTTACGGTCTGTGCGGCCCCAACGGTTGTGGTAAG 14041 Query 279471 AGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCATCTGAG 279530 || || |||||||||||||| ||||| ||||| || || || || | | ||| Sbjct 14040 TCGACGCTCATGCGCGCCATTGCCAACGGCCAGCTCGAGGGCTTCCCCAGCAAGGACGAG 13981 Query 279531 GTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCACTGTGTTC 279590 | | ||| |||| || |||||| || | | | || | || | ||| || Sbjct 13980 CTGAAGACTGTGTTCGTCGAGCACAACCTGCAGGCTTCGGAGGCTGAGCTGTCGGTGGTC 13921 Query 279591 GACTTCCTAACGTCTGA-CAATCAGGTTATGGAAATCAGCTCTCCTGAGGAAATCATCCA 279649 |||||| | |||| | || | | || | || ||| || | | | || | Sbjct 13920 GACTTCATC----CTGATCGATGACGACCTGAAGGACA-CTCCCCGCAAGGAGG--TCGA 13868 Query 279650 GAAA-CTGGAGGCCAA-TGGTTTTGATGAAAGA-ATGCGTAATCTGCCAGTAGGTTCTCT 279706 ||| | ||| | | | || | || |||| || | | || || || || Sbjct 13867 GAACGCCCTTGGCGACGTCGGCTTCACCCCCGAGATGCAGGCTCAGGCCGTGGGCTCCCT 13808 Query 279707 GTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGT 279766 ||||||||||||||||||||| || | || | || ||||| || ||| || || | Sbjct 13807 GTCGGGTGGTTGGAAGATGAAACTCGAGCTGTCGCGTGCCATGCTGCTGAAGGCTGACAT 13748 Query 279767 CCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGTC 279826 || || ||||||||||| || |||||| |||| || ||||| |||||||| | | Sbjct 13747 TCTGCTTCTTGATGAGCCGACGAACCACTTGGATGTCAAGAACGTCGCCTGGCTTGAGAA 13688 Query 279827 CTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCCT 279886 |||||| ||||| || || || | ||| |||| || |||||||||||||||||||| Sbjct 13687 CTACCTGACCAGCGTGCCGACGGTCACCTCCATCATGGTGTCTCACGACTCTGGCTTCCT 13628 Query 279887 AGATGCCGTGTGCTCTGCCATCATTCACTATGAG---CAAAATCTGAAGCTCTCCAAGCA 279943 || |||||| | ||| || ||||||||| | || |||||| ||| |||| Sbjct 13627 CGACAACGTGTGTACCAACATTATCCACTATGAGACCCGCAAGCTGAAGATCTACAAG-- 13570 Query 279944 CATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTATGACCT 280003 || ||||| || ||||||| || || ||||| |||||||| || || Sbjct 13569 ----GGTAACCTTTCCAAATTCGTGGAGCAGAAGCCCGAGGCCAAGGCCTACTACGAGCT 13514 Query 280004 GAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATC-ACAT 280062 | || | | || |||| ||||| ||||| || || |||| | ||| | | Sbjct 13513 GGAGTCGGAGAACGTGAAGTTCACGTTCCCGGAGCCTGGTTTCCTGGCTGATATCAAGAA 13454 Query 280063 CAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAATGGCCCCA 280122 ||| || || | ||||| || | ||| | || || || ||| | Sbjct 13453 CAAGGGTAAGC-CCATCATTCGTCTGACCAACTGCTCGTACAAGTACCCGGGTGCCCCGA 13395 Query 280123 A--CATC-TTCAGCAGTGTCAACTCG--CAGGT---TTCTAT-GAACTCACGGATTGGTG 280173 | | || ||| || || ||| | || ||| | || | || || | | Sbjct 13394 AGCCGTCGATCAACA---ACATTTCGGTGACGTGCGCTCTGTCGAGC---CGTATCGCCG 13341 Query 280174 TCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCC 280233 | |||| ||||| ||||| |||||||| || || ||||| | ||||| || ||| Sbjct 13340 TGCTTGGCCCCAACGGTGCCGGTAAGTCGACGCTGATCAAGATGCTGACGGGTGAGGTGG 13281 Query 280234 AGGCCACTGAGGGGTC-CGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAG 280292 || | || ||| || | || |||||||| || |||||| | || ||||| |||||| Sbjct 13280 AGCCGAC-GAGCGGCCAGGTGTGGAAGCACCCTGCCATGCGTTTCGCCTACGTGGCTCAG 13222 Query 280293 CACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGG 280352 ||||||||||||||||| ||| ||||| ||| ||| | ||||| ||||| |||||| Sbjct 13221 CACGCTTTCCACCACATTGAGTCTCACCTTGACGAGACGGCCAACCAGTACATCCAGTGG 13162 Query 280353 CGCT 280356 |||| Sbjct 13161 CGCT 13158 >seq4292 Length=2137 Score = 167 bits (184), Expect = 5e-36 Identities = 570/863 (66%), Gaps = 33/863 (4%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| |||||||| | ||||| ||||||| ||||| | Sbjct 864 TCGAAGAAGTTGGTCTTGCCCTGGAGAGAGATCATGTCCATCCAGTCGAACGGGTTCTTC 805 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGC-TAC-GAAGATGCGGTCTGCCACAAACTCCA 251680 | ||||| ||| || || || | ||| | ||| ||||| ||||| ||||| | Sbjct 804 ACGTTGTAGATCTTTGGCACACCCAGCGAGTACAGCAGA--CGGTCGGCCACGAACTCGA 747 Query 251681 GATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAG 251739 ||||| | ||| || | ||||||||||| |||| | ||| ||| | || | Sbjct 746 TGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTCCACAGGGAGC-GAGTCGCGC 688 Query 251740 ATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGAC 251799 | ||| || | ||| | | || || || |||||| | | ||| | | | | Sbjct 687 ACGAACTCGTGCTCGATCACCACCGCGTCGCGCACAATCTCGTGCACGCGGCTCTCCGGC 628 Query 251800 AGCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAA-CTGTTGGTGCAGACCCTCGT 251857 ||||||||| ||||||| ||||||| ||| | ||| || | || ||||| |||||||| Sbjct 627 AGCTTGTTCACCAGCTTGGAGTACATGAGGCACGCGAAGTCCGT--GTGCATACCCTCGT 570 Query 251858 CGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCC 251917 | || ||||| | |||||| || | | |||||||||||| | || || ||| |||||| Sbjct 569 CACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGAGCC 510 Query 251918 AGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAA 251977 ||||||| | ||| ||||| || ||||| | | ||||| || | | || | | Sbjct 509 AGAAGATGGAGCAGAAGGAGCCCGAGAAGAAAATGCCCTCCACGGCGGCGAACGCCAGCA 450 Query 251978 GGCGCTCAGCAAACGACTTGTCCTGCG---ACAAGAACTTCTGTGCCCA-TGCTGCCTTC 252033 | ||||| | ||||| | ||| | |||| | ||||| ||| || ||| Sbjct 449 GACGCTCCGGGTACGACGACACACGCGGGTCGCACCACTTGAGCGCCCAGTGC-GCTTTC 391 Query 252034 TT-TCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTC 252092 || | || | | ||||| || ||||| || | || || | ||| | |||| Sbjct 390 TTCTTCACGCAC-GGGATCGTCTCGATGGCGCGCAGCAGGTGGTCCTTCTCCACGGCGTC 332 Query 252093 CTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACAT 252152 || |||| || ||||| || || ||||||| ||| | |||||| ||| || || Sbjct 331 CTTGATGTACGTATCAATGAGCAGCGAGTACACCTCGGCGTGGATGTTCTCGATGGCGAT 272 Query 252153 CTGGTAAGCATAGAATAGACGC-GCGGA---AGGGTCGGTG-ACTTCCGTGGAAAAGTTG 252207 |||| |||| |||| || ||||| ||| || ||||| || ||||| Sbjct 271 CTGG-AAGC----CGTAGAAGCAGCGGACCTCGGGCACCTGCACTTCATTGCTGAAGTTC 217 Query 252208 TTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTG 252267 | || | |||||| |||| || || ||||| | || ||||| | || | | |||| Sbjct 216 ATGGCCAGGTTCTCGTTCACAATACCGTCGCTCGCAGCGAAGAACGCCAGCACGTGCTTG 157 Query 252268 ATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGA 252327 |||||| ||||| | ||| | || || | |||||| | ||| || ||| Sbjct 156 ATGAAGAACCGCTCGTTGTCCGTCAGGTTCGC---CCAGTCCTTGAGGTCGTGCACCAGG 100 Query 252328 GGAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACACATC 252386 | || || |||||||||| | || | |||||||||||||||| ||| |||| || Sbjct 99 TCCAGCTCCTCGGCCGTCCAGAACGAGGCCTCCGCCTTCTTGTACATCTGC-CACACGTC 41 Query 252387 AGGGTACTTGATTGGGAA-AGCA 252408 | | || ||| ||||| |||| Sbjct 40 GTGCTCCTGGATCGGGAACAGCA 18 >seq4320 Length=1636 Score = 131 bits (144), Expect = 3e-25 Identities = 266/386 (69%), Gaps = 8/386 (2%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || ||||| || | |||||||| ||| ||||| | ||||| ||||||| ||||| || Sbjct 1255 TCAAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATCCAGTCGAACGGGTTCTTG 1314 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGC-TACGAAGATGCGGTCTGCCACAAACTCCAG 251681 | ||||| ||||| ||| |||| ||| | | |||||| ||||| ||||| | Sbjct 1315 ACGTTGTAGATCTTGGACACGCCCAGTGAGTAC-AGCAGGCGGTCCGCCACGAACTCGAT 1373 Query 251682 ATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGA 251740 ||||| | ||| || | |||||||||||||| | | ||| || | | || || | Sbjct 1374 GTACTGGCACATGAGCGCCGAGTTCATGCCAATGAGCTCCACA-GGCAGCGAATCGCACA 1432 Query 251741 TGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACA 251800 ||| || | || | | || || || ||| || | | ||| | | || Sbjct 1433 CGAACTCGTGCTCAATCACCACCGCGTCGCGCACGATCTCGTGCACGCGGCTTTCGGGCA 1492 Query 251801 GCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAA-CTGTTGGTGCAGACCCTCGTC 251858 ||||||| | ||||| ||||||| ||| | ||| || | || ||||| ||| ||||| Sbjct 1493 GCTTGTTGACGAGCTTCGAGTACATGAGGCACGCGAAGTCCGT--GTGCATACCTTCGTC 1550 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 || ||||||| |||||| || | | ||| |||||||| | || || ||| ||||||| Sbjct 1551 TCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAGGCCGCGCTTCTTGAGCCA 1610 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGA 251944 |||||| | ||| || || || |||| Sbjct 1611 GAAGATGGAGCAGAACGAGCCCGAGA 1636 >seq457 Length=26735 Score = 113 bits (124), Expect = 9e-20 Identities = 241/359 (67%), Gaps = 6/359 (2%) Strand=Plus/Minus Query 218650 GAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGT 218709 ||| | ||||| || || | |||| ||||| ||||| |||| ||||| ||||| Sbjct 15253 GAACTAAAGGTGGCGCAACTGGCTGGCTATGTCTCCGAGCACTCTGCGTACCACCACGGC 15194 Query 218710 GAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAAC 218769 ||||||||| |||| ||| |||||| |||||| ||||| | ||| || || ||||| Sbjct 15193 GAGCAGAGTTTGCAAGGTTGTATTGTAAACATGGCCCAGGATTTTGTTGGAAGCAACAAT 15134 Query 218770 ATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGT 218829 | || | ||| || | ||||||||||||| | ||| | |||| || |||||| Sbjct 15133 GTCCACCTCCTGTCGCCGATCGGTCAGTTTGGTACGCGTTTGATGGGCGGCAAGGATGCG 15074 Query 218830 GCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAAT--- 218886 || || | ||||| || || || ||| | | || |||| | | | | || Sbjct 15073 GCCAGCGCACGTTATATTTTCACCAACTTGGAACAGCTTACTCGCCGGATCTACGATCCA 15014 Query 218887 CAGGCCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAG 218946 | | | | || ||| |||||||||||||| || || || ||||| ||||| || Sbjct 15013 CTTGACAACGACGTG---CTTAAGTATCTTGACGAAGACGGCCAGTCGATCGAGCCGGAA 14957 Query 218947 TGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGGTATCGGGACAGG 219005 ||||| | || ||| ||| | |||| || || || | |||||||| ||||| Sbjct 14956 TGGTACATTCCAATTATCCCGATGGTGCTTGTCAACGGCAGTGACGGTATCGGAACAGG 14898 >seq1022 Length=12964 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 12911 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 12852 Query 142563 CCCCAC 142568 |||||| Sbjct 12851 CCCCAC 12846 >seq706 Length=20588 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 280713 ATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAA 280772 || |||||||| || || ||||||||||| || || ||||||| || || ||||| | Sbjct 7113 ATCCGCGGTCTCTCAGGCGGCCAGAAGGTGAAGCTCGTCATCGCTGCGGCCATGTGGAAC 7172 Query 280773 CACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGC 280832 | ||| ||| || | || || || ||||| || || || |||||||||| | |||||| Sbjct 7173 CGCCCGCACTTGCTGGTGCTGGATGAGCCGACGAATTACCTGGACCGCGCGGCGCTGGGC 7232 Query 280833 GCTCTG 280838 || ||| Sbjct 7233 GCCCTG 7238 >seq2411 Length=5525 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| ||||||||||||||||||||| | || |||| | |||||||||||||||||||| Sbjct 4960 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 4901 Query 142565 CCAC 142568 |||| Sbjct 4900 CCAC 4897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027760721768457