Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq476 526 4e-144 seq4292 410 2e-109 seq4320 185 2e-41 seq386 122 2e-22 >seq476 Length=26050 Score = 526 bits (582), Expect = 4e-144 Identities = 1163/1734 (67%), Gaps = 60/1734 (3%) Strand=Plus/Minus Query 243775 CAGGTAGTACATGCCGGTCTTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAG 243834 || ||||||||||||||||||||| || | |||||||| || |||||| | ||| || Sbjct 4816 CATGTAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGACGTGAG 4757 Query 243835 CTTCTTCATCTTGAGCTTTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTG 243894 ||| | || | |||||| | | || |||||| ||||| ||||| Sbjct 4756 CTTGCTGATGGTC------GGGTCGGCGATGTG------GATGTTGAGCGACTGACTCTG 4709 Query 243895 GTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATA 243954 | | | ||| | || || || | || | | | ||||||| ||||| | Sbjct 4708 GCAAATGTAGGCACCGCGGTCGGCCGACAAGTCCAGTACTGCCTTCTGCTTGATCTCCCA 4649 Query 243955 CGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAAC-CCTTCGATGTTCTGCACCGAGC 244013 | |||||||||| | ||||| ||| ||||||| ||||| | |||||||| |||| Sbjct 4648 CACCGTCTTGTACTTCTCCTTGACGTGATCGGGGATGGCCTTC-ACCTTCTGCACGGAGC 4590 Query 244014 CCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCA--- 244070 | || | | || ||| |||||| || |||| | ||||| |||| | Sbjct 4589 CGCCGTCGTTCAGGATCTGATTGCGCACGTCGGGTGTCCAGATGCCCA---GCTCAATGA 4533 Query 244071 GCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGT 244130 || ||| | ||||| | ||||||| | | ||||| || | |||||| ||||| | || Sbjct 4532 GCTCCTTCATCAGGTACTTGTTCACGATCGTGAACTCACCGGCCAGCACACGGCGGTTGT 4473 Query 244131 AGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCG 244190 | | |||| || ||||||||| ||| ||||||| || ||||| |||||| | Sbjct 4472 ACATGTTGGACGTGTAGGGCTCGATGGACTCGTTGTTGCCTAGGATCTGGGCCGTGGAAG 4413 Query 244191 CAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTC 244250 | || |||||||| | ||||||||| ||| | | ||||| | || || || Sbjct 4412 CCGTGGGCATGGGGGCCACCAGCAGCGAGTTGCGAAGACCGTG--TTTGACCACGTTCTC 4355 Query 244251 --TGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTC 244308 ||||| | ||||| ||| | |||||| || | | || |||||||||||| Sbjct 4354 CTTGAGCGCCGCCCAGTTCCAGAGACCCGAGGA-----CGGGGT-GACGCCCCACATGTC 4301 Query 244309 AAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCG 244368 ||||| | | |||||||||| | || ||||| | | ||| |||||| ||| Sbjct 4300 GAACTGGAAGATCCCCTTGCTGGCCGGCGAGCCCTGGAACGTCTCGTAGGGGCCGAGCTC 4241 Query 244369 CTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTT 244428 || ||| | || | | |||| ||||||||||||||| ||||||||||| |||| Sbjct 4240 CTTGGCAATCTCCATGGACGTCTCGACGGCGGCGTAGTAGATCGTCTCGAAGATGTTCTT 4181 Query 244429 GTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGC 244488 ||| | |||||||||| ||| ||| | | | ||| | |||||| |||| || Sbjct 4180 GTTGAGCTCGCGGGCCTGCTCGCTCTCGAACGCGTAGTTCATGAGGATGAAGGCGTCCGC 4121 Query 244489 CAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA---GCGCATGGCTTC 244545 || ||||| ||||||||||||||||| | ||| ||| ||||||| |||| || || Sbjct 4120 GAGGCCCTGGACGCCGATGCCGATGGGGCGGTGGCGCATGTTGGACTTGCGC---GCCTC 4064 Query 244546 GGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGAC 244605 || ||||||||| ||||| ||||||| |||||||||||||||||||| | || | Sbjct 4063 GGCCACGGGGTAGTAGTTGACGTCGATGACCTTGTTGAGGTTGCGGGTCACCACCTTGGT 4004 Query 244606 GACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCAC 244665 ||| ||| || ||| ||||| || || | ||| | ||| Sbjct 4003 GACCTCGTAGAGTTTCTGGTAGTCGAACACGCCG------TCGTC------------CAC 3962 Query 244666 AAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTA 244725 |||| | || || ||| |||||||||||| ||||||||||| || | | ||||| Sbjct 3961 GAACTTGGGCAGCGCCACGGAGGCCAGGTTGCACACGGCCACCTCGTCGGGGGACGTGTA 3902 Query 244726 CTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGA 244785 || | | |||| ||| ||||| ||| | ||||||||| |||| ||| || ||||| Sbjct 3901 CTCCATCACCTCGCAGCACAGGTTGCTGGAGCGGATGGTGCCGAGGTTCTGCTGGTTGGA 3842 Query 244786 CTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGAC 244845 |||| |||| |||||||||||||||||||||||| | || ||||||| ||| ||| | Sbjct 3841 CTTGCGGTTGGCCGCGTCCTTGTAGAGCATGAAGGGCACGCCCGTCTCGATCTGCGCGTC 3782 Query 244846 GAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTC 244905 |||| | | ||| || | | || |||| ||| |||| || |||||| ||| Sbjct 3781 CAGGATGGCGAACCACAGCTGCTGCGCGTTGATGGTCTTGCGGGCGCGGCCCTCGCGCTC 3722 Query 244906 GTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGG--CAC 244963 ||| | ||| ||| ||| |||||| |||||| ||||| || |||||| | | Sbjct 3721 GTACTTGTCGTAGAGGCTCTCAAACTCGTCCCCCCAGCACTCGTAGAGCCCGGGGGCCTC 3662 Query 244964 GACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCG 245023 | | ||||| | | |||||||| |||| | ||| || | || |||||| |||||| Sbjct 3661 GTTG--GGGCAGAACAAACTCCACTTGCCGTTGGCCTCCACGCGCTTCATGAACAGGTCG 3604 Query 245024 GGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTC 245083 || | ||| || || | ||| ||||| | || | ||| || ||| |||||| Sbjct 3603 GGCACCCACAGCGCGTAGAACAGGTCGCGGGCACGGTGCAGCTCGTTGCCGTGGTTCTTG 3544 Query 245084 CTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCG 245143 | ||| |||| || || || |||||| ||||||||||||| | ||||| |||| | | Sbjct 3543 CGCAGGTCCAGGAACTCGAACACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCGAAGCTG 3484 Query 245144 CCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGG 245203 || |||||| ||| ||||||||||| || | ||||||| | |||||| Sbjct 3483 CCCTTGCGCTTGCCGCCGCCCTGGTCCACGTACCGGGCCGTGTCGTTGAACACGCGCAGC 3424 Query 245204 GTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTG 245263 | || | |||||||| ||| |||||||||||| |||||| | || | | Sbjct 3423 ATGGGGATGATGCCGTTGGAGGAGCCGTTGGTGCCGCGAATGTAGCTGTTGGTGGCACGA 3364 Query 245264 AGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTG 245323 | |||| ||| ||||| | || || || |||||||||| |||||| |||| Sbjct 3363 ATGTTGTGCATGCTGATGCCGATACCCCCCGCCCACTTGGAGATGCAGGCGCACTGCTTG 3304 Query 245324 ATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGAC 245383 | ||||| || ||||| ||| ||| || |||| | || |||||||||||| Sbjct 3303 AGCGTGTCATAGATACCCTCGATGGAGTCGTCCTGCATGGCCAATAGGAAGCAGGAGGAC 3244 Query 245384 AGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGG 245443 ||||| || || | | | ||| ||||| || || | ||||| || ||| | | Sbjct 3243 AGCTGCGGACGCGGCGTTCCGGCGTTAAACAGCGTCGGCGTCGCGTGCGTGAAG-AACTT 3185 Query 245444 CT-CGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGAT 245496 || ||| | || | ||||||||| ||| || | ||||| | | |||||| Sbjct 3184 CTGCGACATGAGCTCGTACGTCTCCAGCGCGGCCTGGATGTCGGCCTTGTGGAT 3131 >seq4292 Length=2137 Score = 410 bits (454), Expect = 2e-109 Identities = 616/866 (71%), Gaps = 17/866 (2%) Strand=Plus/Plus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| || | || ||| | ||| ||||||||||||||| || ||| |||||| || Sbjct 28 GATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAGGCCTCGTTCTGGACGGC 87 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAA 42403 ||||||| | ||||||| | ||| | ||||| | ||| | || ||||| Sbjct 88 CGAGGAGCTGGACCTGGTGCACGACCTCAAGGACTGGGCGAACCTGACGGACAACGAGCG 147 Query 42404 GTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAA 42463 ||| ||| |||| || | ||||| |||||||| || ||||| || || || ||||| Sbjct 148 GTTCTTCATCAAGCACGTGCTGGCGTTCTTCGCTGCGAGCGACGGTATTGTGAACGAGAA 207 Query 42464 CCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTT 42523 |||||||| | |||| || || |||||| |||| ||||||||||||||||| Sbjct 208 CCTGGCCATGAACTTCAGCAATGAAGTGCAGGTGCCCGAGGTCCGCTGCTTCTACGGCTT 267 Query 42524 CCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTA 42580 |||||| ||||| |||||| | ||| | ||||||||| | ||||||| | ||||| Sbjct 268 CCAGATCGCCATCGAGAACATCCACGCCGAGGTGTACTCG---CTGCTCATTGATACGTA 324 Query 42581 CATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCAT 42640 |||| ||| |||| ||| || ||| | ||||| |||||||| || ||| | Sbjct 325 CATCAAGGACGCCGTGGAGAAGGACCACCTGCTGCGCGCCATCGAGACGATCCCGTGCGT 384 Query 42641 CAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGA 42700 |||||||| ||| ||||||||||||| ||| ||| | | | ||| | || Sbjct 385 GAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGTGTGTCGTCGTACCCGGA 444 Query 42701 GAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCAT 42760 | | ||| | || || ||||||| |||||||| |||||||||||| ||||| |||||| Sbjct 445 GCGTCTGCTGGCGTTCGCCGCCGTGGAGGGCATTTTCTTCTCGGGCTCCTTCTGCTCCAT 504 Query 42761 CTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCA 42819 ||||||||||||| || || || ||||| || || | |||||||||||| || |||| Sbjct 505 CTTCTGGCTCAAGAAGCGCGGCCTC-ATGCCTGGCCTGAGCTTCTCGAACGAGCTGATCA 563 Query 42820 GCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGC 42879 || | |||||||| |||| | |||||| || |||||| ||| ||| | | || | Sbjct 564 GCCGTGACGAGGGTATGCACACGGACTTCGCGTGCCTCATGTACTC---CAAGCTGGTGA 620 Query 42880 ACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGG 42939 |||||| || || || || | | || | || || |||| ||||||| | | Sbjct 621 ACAAGCTGCCGGAGAGCCGCGTGCACGAGATTGTGCGCGACGCGGTGGTGATCGAGCACG 680 Query 42940 AGTTCCT-CACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGC 42998 ||||| | | || | ||||| || ||| ||| ||||||||||| | ||||||||| Sbjct 681 AGTTCGTGCGCG-ACTCGCTCCCTGTGGAGCTGATCGGCATGAACTCGGCGCTCATGTGC 739 Query 42999 AAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCC--GCCTCT 43056 |||||||| ||| ||| ||||||| ||| |||| | | ||||| | ||| ||| Sbjct 740 CAGTACATCGAGTTCGTGGCCGACCGTCTGCTGTACTCGCTGGGTGT--GCCAAAGATCT 797 Query 43057 ACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACT 43116 ||||| | | ||| ||||||| ||||| | ||||| | ||||||||||||||| Sbjct 798 ACAACGTGAAGAACCCGTTCGACTGGATGGACATGATCTCTCTCCAGGGCAAGACCAACT 857 Query 43117 TTTTCGAGAAGCGCGTCGCCGACTAC 43142 | |||||||||||||| | ||| ||| Sbjct 858 TCTTCGAGAAGCGCGTGGGCGAGTAC 883 >seq4320 Length=1636 Score = 185 bits (204), Expect = 2e-41 Identities = 288/406 (71%), Gaps = 7/406 (2%) Strand=Plus/Minus Query 42739 TCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GGTGTCGATGCCCGGACTC 42797 |||||||| | ||| ||||||||||||||||||| || || || ||||| || || Sbjct 1636 TCTCGGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTC-ATGCCTGGTCTG 1578 Query 42798 ACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTC 42857 | |||||||||||| ||||||||| | ||||| || |||| | |||||| || |||||| Sbjct 1577 AGCTTCTCGAACGAGCTCATCAGCCGAGACGAAGGTATGCACACGGACTTCGCGTGCCTC 1518 Query 42858 CTGTTCTCGAGCCACCTCAGGCACAAGC-CCTCGAAGGAGCGGGTCCGGGCCATCATCAC 42916 ||| ||||| | | ||| |||||| | |||| | || || | | ||| | Sbjct 1517 ATGTACTCGAAGCTCGTCA---ACAAGCTGCCCGAAAG-CCGCGTGCACGAGATCGTGCG 1462 Query 42917 GGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGG 42976 || || |||| ||| ||| | |||||| | | |||||||| ||| || | || Sbjct 1461 CGACGCGGTGGTGATTGAGCACGAGTTCGTGTGCGATTCGCTGCCTGTGGAGCTCATTGG 1402 Query 42977 CATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCA 43036 ||||||| | ||||||||| |||||||| ||| ||| || |||| || |||| | Sbjct 1401 CATGAACTCGGCGCTCATGTGCCAGTACATCGAGTTCGTGGCGGACCGCCTGCTGTACTC 1342 Query 43037 GATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTC 43096 |||| | | |||||||| | ||| ||||||| ||||| | ||||| Sbjct 1341 ACTGGGCGTGTCCAAGATCTACAACGTCAAGAACCCGTTCGACTGGATGGACATGATCTC 1282 Query 43097 GTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTAC 43142 | || |||||||||||||||| || ||||||||||| | ||| ||| Sbjct 1281 GCTGCAGGGCAAGACCAACTTCTTTGAGAAGCGCGTGGGCGAGTAC 1236 >seq386 Length=30384 Score = 122 bits (134), Expect = 2e-22 Identities = 249/358 (70%), Gaps = 18/358 (5%) Strand=Plus/Plus Query 242949 TTCCCGGACAGGACCACTCCGATCGGACAGATGATCAACTCGTACCTG-----CTCAACA 243003 ||||||||| | | ||| | ||||| |||| ||| ||||||||||| ||| | Sbjct 15176 TTCCCGGACCGCAGCACGGCCATCGGCCAGAGCATCCACTCGTACCTGACGAGCTC--CG 15233 Query 243004 AGAGCGATCTGGACGATCACGTCGTACACCTCCTGTTCTCGGCCAACCGATGGGAAGCCG 243063 || || || |||||| |||| | | ||||| || |||||||||||||| ||||| |||| Sbjct 15234 AG-GCCAT--GGACGACCACGCCATCCACCTGCTCTTCTCGGCCAACCGCTGGGAGGCCG 15290 Query 243064 CCTCCGACCTGAAGCGCAAGCTGATGA-AGGGTACCACCATCGTGCTCGACCGCTACGCG 243122 || | | | || || |||| | || | || |||| | | ||||||||| || Sbjct 15291 CCGGCAAGATCGAGAGCCTGCTGGCCAGCGGCCAGCA-CATCATCATGGACCGCTACTCG 15349 Query 243123 TTCTCCGGCGTAGCCTTCACGGCGGCGAAGCCCGGGTTCGAGCTCGAGTGGTG-TAAGCG 243181 ||| |||||| |||||| |||| || ||| ||| | ||||| ||||| | ||| Sbjct 15350 TTCAGCGGCGTGGCCTTCTCGGCCGCCAAGAGCGGCATGTCCCTCGACTGGTGCTGGGCG 15409 Query 243182 AACCGACGTGGGTCTGCCCAAGCCCGACCTGGTGGTGTTCCTGGCCAT--CGAGGCCTCC 243239 |||| | || ||||||||||||||| || | ||||||| | | || | | Sbjct 15410 -CCCGAGATCGGCCTGCCCAAGCCCGACGCCGTCATCTTCCTGGACGTGCCGGTCACGCA 15468 Query 243240 GCCGTGGAGAGCAGAGGCGGCTTCGGCGACGAGCGGTACGAGGTCAGCGCCTTCCAGG 243297 | ||| | || | | || ||||||| | |||||||||||| || |||||||||| Sbjct 15469 GGCGTCCA-CGC-GCGCCGACTTCGGCCAGGAGCGGTACGAGACCACGGCCTTCCAGG 15524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944271006905520