Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq1844 141 8e-29 >seq1844 Length=5900 Score = 141 bits (156), Expect = 8e-29 Identities = 457/701 (65%), Gaps = 25/701 (4%) Strand=Plus/Plus Query 20134 CGGAAAGGGACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTGTA 20193 ||| || ||||| || || || || |||||| | | || ||||| | ||| | || Sbjct 1773 CGGGAACGGACGCGGTGTTCGAGTAAGCTGCTTCTGGAGCGGCTCGACATGATTCAGATA 1832 Query 20194 GATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGC 20253 | |||||||||||| | ||||| |||||| || || | | |||| || || || Sbjct 1833 CACGTGGGCATCTCCAATAACGTGAACAAACTCTCCAGGCTTCAATCCAGCCACCTGCGC 1892 Query 20254 AAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTC 20313 || || || | | | ||||| || || || || || || || | |||||||| Sbjct 1893 AACCAGTCGCGTAAGCAATGCGTAGCTAGCGATATTGAACGGCACGCCAAGTCCCATGTC 1952 Query 20314 TCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAA 20373 |||| | ||| |||| ||| ||||||||||| ||||| || || || || || || || Sbjct 1953 GGCCGAGCGCTGGTACATCTGGCAGGAAAGCTCGCCGTCGGCCACGTAGAACTGGCAGAA 2012 Query 20374 CAAGTGACAGGGCGGAAGCGCCA--TCAACGACAAGTCCGCCGGGTTCCACGCACACATA 20431 || ||| || ||||| ||||||| ||| || | |||||||| |||||||| ||| Sbjct 2013 CATGTGGCACGGCGGGAGCGCCATCTCATTGAGA--TCCGCCGGATTCCACGCCGACAGC 2070 Query 20432 ATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTGGTCA 20491 | ||| | | || ||| || | | | | || || | ||||| Sbjct 2071 ACGATGCGGCGGTCCGTCGGGTTCGTGCGCAGCTTGTGGATAACCCCCGCGAGCTGGTCC 2130 Query 20492 AACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCAC 20551 | |||||||| || || || |||| | |||| |||| || ||||| |||| |||| Sbjct 2131 ACGCCCTGGCCAGTGTAATCGGCATGCATGTCCGTGTACTTGGCGCCAAAATGCCGCCAC 2190 Query 20552 TGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGC---CAGGCCGCGCCCG 20608 ||||| ||||| || ||||| | || ||| || ||| |||| ||| || || | | Sbjct 2191 TGGAAGCCGTAGACCGGTCCGAGGTCGCCCACC--TCT-CGCGCCTGCAGCCCTCGACTG 2247 Query 20609 GCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGA----CTCCTGTT--CTTGAA 20662 |||| |||| | || |||| |||||| || | || || ||| | || Sbjct 2248 TCCAGATACTCGCGCGACGCATTGCCGTCCCAGATGTGGATGTCCTTCTGCTGCAGCGAG 2307 Query 20663 AGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGC 20722 || | |||| ||| || | | ||||| |||||||| | | ||||| ||| Sbjct 2308 TGCGCGCTGGTGTC------GCCGCTGATGAACCACAGCAGCTCCTCGGCCACGCCGCGC 2361 Query 20723 CAAAACACCCGCTTTGTGGTTAGTA-AGGGA--AAGTGGTCCCGCAGACTATACCTGGCC 20779 || ||||| ||||| || || || | |||| | || ||||| || || ||| | Sbjct 2362 CAGAACACGCGCTTGGTCGTGAGCAGCGGGAACACGTTGTCCCTGAGGCTGAACCGCATC 2421 Query 20780 TGCATGCCAAATAGAGAGAGGGTGCCTATGCCGGTGCGGTC 20820 ||| ||| || | || || ||||| | || |||||||| Sbjct 2422 TGCGCGCCGAAGACCGACAGCGTGCCCGTCCCCGTGCGGTC 2462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441340927366680