Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq93 98.7 8e-16 seq6 93.3 3e-14 seq4 82.4 6e-11 >seq93 Length=65012 Score = 98.7 bits (108), Expect = 8e-16 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| ||||||||||| || ||||||||||||||||| |||||||| || | Sbjct 59779 ACCACCACGCAGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGA 59720 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || |||| |||| ||||||||||| || |||||||||||||| || Sbjct 59719 GAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 59666 >seq6 Length=256829 Score = 93.3 bits (102), Expect = 3e-14 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || ||||| ||||||||| |||||||| || || Sbjct 246181 CCACCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTC-GCT 246123 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| || | |||||||| || || |||||||||||||| || ||| Sbjct 246122 CAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGG 246063 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| |||||| ||| || ||||| Sbjct 246062 GATGCCCTCCTTGTCCTGAATCTTCTGCTT 246033 >seq4 Length=136950 Score = 82.4 bits (90), Expect = 6e-11 Identities = 189/278 (68%), Gaps = 10/278 (4%) Strand=Plus/Minus Query 39936 GCCGCGGGCATGGACCTGAGGAGCGCATACGACTACGTGATTCCTCGCAA-CGACCGAAT 39994 ||||||||| |||||||| | ||| |||||| |||||| || ||| || | || Sbjct 14842 GCCGCGGGCCTGGACCTGTCGGCCGCCTACGACGCCGTGATCCC-CGCGGGCGGC--AAG 14786 Query 39995 G--CTGGTGAAGACGGACAT--TGCTCTACAACTACCCAAAGAGTGCTACGGTAGAATAG 40050 | || || ||||||||| | || || | | ||| | ||||||| | | | Sbjct 14785 GGCCTCGTCAAGACGGACCTGGTGGTCGCCG--TGCCCGCCGGCTGCTACGCGCGCGTGG 14728 Query 40051 CGCCTCGGTCCGGACTGGCGCTGAAGCACGGTATCGACATTTCGGCCGGCGTCATAGATT 40110 |||| || || || |||||||| ||| | ||||||| || ||||| || || Sbjct 14727 CGCCGCGCTCTGGCCTGGCGCTCAAGAAGTTCATCGACACGGGCGCGGGCGTGATCGACG 14668 Query 40111 CTGACTACACGGGCAACGTGGGCGTGGTGATGGTGAACAACGGAGACGAGGCCTTTGTGG 40170 | |||||| ||||||||||||||| | || | ||| ||| | ||||| ||| | Sbjct 14667 CCGACTACCGCGGCAACGTGGGCGTGATCCTGTTCAACCACGCGGCCGAGGACTTCCCCG 14608 Query 40171 TGCTTCGAGGAGACCGCATCGCCCAGCTCATACTGGAG 40208 ||| || || |||||| | || |||||||| || ||| Sbjct 14607 TGCAGCGCGGGGACCGCGTGGCGCAGCTCATCCTCGAG 14570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397034443953154