Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq45 141 2e-28 seq6 131 4e-25 seq745 111 4e-19 seq164 100 7e-16 >seq45 Length=78880 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || || | ||| || || |||| || || || ||||| || |||||| Sbjct 57286 TCCGCCACGAAGACGAAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCT 57227 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 |||||||| ||||| || | || || || ||||||||||||||||| || | || Sbjct 57226 CAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 57167 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| || || || || ||||||||| |||||||| || || || || || || || Sbjct 57166 GATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 57107 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||||||||| |||||||| ||||| ||||| |||||||| Sbjct 57106 GTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 57059 Score = 140 bits (154), Expect = 8e-28 Identities = 171/232 (74%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | ||| || || |||| || || || ||||| || |||| Sbjct 57061 CATG-CCACCACGCAGGCGAAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGT 57003 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || | |||||| ||||| || | || || || ||||||||||||||||| || | Sbjct 57002 CGCTCAACGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAG 56943 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || || || ||||||||| |||||||| || || || || || | Sbjct 56942 GCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCT 56883 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || |||||||||||||| |||||||| ||||| ||||| |||||||| Sbjct 56882 CCACGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 56831 >seq6 Length=256829 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || || | ||| || || ||||| || |||||| Sbjct 246181 CCACCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 246122 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| |||||||| | || || || ||||||||||| ||||| || | ||| Sbjct 246121 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGG 246062 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || ||| |||||||| || || || || || || || Sbjct 246061 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 246002 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 246001 TCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTTACGAAGATCTGCAT 245955 >seq745 Length=17434 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||| | ||||||||| ||||| || | || || || ||||||||| Sbjct 12112 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 12053 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 | ||||| || | ||||| || || || |||||||||||| || || || || Sbjct 12052 AAGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 11993 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || ||| || || || || |||||||| ||||| || ||||| ||||| || || Sbjct 11992 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 11933 Query 288466 ATCTGCATTAT 288476 |||||||| || Sbjct 11932 ATCTGCATGAT 11922 >seq164 Length=75961 Score = 100 bits (110), Expect = 7e-16 Identities = 106/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 326194 TGCCACGGATGCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCT 326253 ||| || | ||||||||| || |||| ||||||||||||||||||||| || |||||| Sbjct 16080 TGCAACAGTTGCATCGCGCACATTCAGTAGTTTTCCACGAAGAGGGAAAACGCCATATTG 16139 Query 326254 CTCGCGACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGT 326313 || || ||||| || | ||| || || | |||||||| | || ||||| || || || Sbjct 16140 GTCACGTCCGACAACTGCCAGTCCAGCCACTGCAAGTGCCTTAGCTGAATCACCTTCTGT 16199 Query 326314 CAGAATGAGAGTGCACATT 326332 ||| || |||| ||||| Sbjct 16200 CAGGAT--AAGTGAACATT 16216 Score = 87.8 bits (96), Expect = 4e-12 Identities = 175/255 (69%), Gaps = 6/255 (2%) Strand=Plus/Plus Query 325342 ATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTG-ATGT 325400 |||||| || |||||||| | | ||||||||||| ||| || | ||| | | || Sbjct 15177 ATCCTTGCCTCCCTGCAAACGAGTTCCGAACTGGCCGGACGGATAC-AGCAGCGGAAGGT 15235 Query 325401 TATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGC 325460 | || || || ||||||| || | ||| || || || |||| || | |||| Sbjct 15236 TGTTAGAACCCACGAAATCCTGCGCCATGTTTACAATTGTAGAGTGCAATGAAGTCTCGC 15295 Query 325461 CATGGTGATAGGCGCTATG--CTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTC 325518 | ||||| ||||| |||| | ||||| |||||| | ||| || |||||||| || Sbjct 15296 CGTGGTGGTAGGCCGTATGTTCACTGCA--GTAACCAGCAAGCTGCGCCACCTTCACCTC 15353 Query 325519 GGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAAACC 325578 | |||||| |||||||| | | | | ||| ||| || || || || ||||| ||| Sbjct 15354 GCTCGTCAGCTTGCGCTTCAGACAAGCAAATAGCACCTTACGCTGTGAGATTTTGAGACC 15413 Query 325579 ATCAACGACCGACGG 325593 ||| || || ||||| Sbjct 15414 ATCGACCACTGACGG 15428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179567084561806