Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq467 140 7e-28 seq4292 111 3e-19 seq4320 107 4e-18 seq164 104 5e-17 >seq467 Length=26285 Score = 140 bits (154), Expect = 7e-28 Identities = 668/1049 (64%), Gaps = 37/1049 (4%) Strand=Plus/Plus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| |||||||| | ||||| ||||| |||||||||| ||| |||||| Sbjct 13135 CTCCTTGTCCTCACCGGACTGGAAGCGCCACTGGATGTACTGGTTGGCCGTCTCGTCAAG 13194 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 ||| ||| |||||||||||||| ||||| |||||||| || | |||||| || || Sbjct 13195 GTGAGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGCAGGGTG 13254 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 |||||| || ||| | || | |||| | ||||| |||| ||| || || || Sbjct 13255 CTTCCACACCTGGCCGCTCGTCGGCTCCACCTCACCCGTCAGCATCTTGATCAGCGTCGA 13314 Query 333494 TTTTCCCGCACCATTTTCGCCTACCACACCAATCCTG-------GAGTTCAGCGATACCT 333546 || || ||||| || ||| | ||| | || | | ||| || || ||| Sbjct 13315 CTTACCGGCACCGTTGGGGCCAAGCACGGCGATACGGCTCGACAGAGCGCA-CGTCACC- 13372 Query 333547 GGGCATTCACGTTG-TCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCG 333605 | | | |||| || | | | || | |||||| |||||| | | || Sbjct 13373 --GAAATGTTGTTGATCGACG----GCTTCGGGGCACCCGGGTACTTGTA-CGAGCAGTT 13425 Query 333606 CGT-AGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGG 333664 || || ||||||| |||| ||||| | | ||||| || ||||| || Sbjct 13426 GGTCAGACGAATGATGGGCTTACCCTTGTTCTTGATATCAGCCAGGAAACCAGGCTCCGG 13485 Query 333665 GAACTTCCACGT---GGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACG 333721 |||| | || | | ||| || ||| || ||||||| | | ||||| Sbjct 13486 GAACGTGAACTTCACGTTCTCCGACTC---CAGCTCGTAGTAGGCCTTGGCCTCGGGCTT 13542 Query 333722 CTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTA 333781 || || |||||| | ||| || || |||||||| |||||||||| || | || || Sbjct 13543 CTGCTCCACGAATTTGGAAAGGTTACCCTTGTAGATCTTCAGCTTGCGG---GTCTCATA 13599 Query 333782 ATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCA 333841 |||||||| ||| || || ||||||||| || |||||||| ||||| || | | | Sbjct 13600 GTGGATAATGTTGGTACACACGTTGTCGAGGAAGCCAGAGTCGTGAGACACCATGATGGA 13659 Query 333842 CGAAACGTCCTTAAGGTTGATCAGGTA-TTCAATC-AGCCACCTCACGTTAGACACAGAA 333899 | || | | | || ||||||| ||| || ||||| ||||| ||| Sbjct 13660 GGTGACCGTCGGCACGCTGGTCAGGTAGTTC--TCAAGCCAGGCGACGTTCTTGACATCC 13717 Query 333900 AGATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCA 333959 | ||||| |||||||| |||||||| || | | || ||||| ||||| ||||| | Sbjct 13718 AAGTGGTTCGTCGGCTCATCAAGAAGCAGAATGTCAGCCTTCAGCAGCATGGCACGCGAC 13777 Query 333960 AGAGCGAGTTTCATTTTCCACCCTCCTGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCA 334019 || |||||||||| ||||| || || || || | | | | || || ||| Sbjct 13778 AGCTCGAGTTTCATCTTCCAACCACCCGACAGGGAGCCCACGGCCTGAGCCTGCATCTCG 13837 Query 334020 ATATCAAAGCCAACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTTTTCC 334079 ||||| || | || | | ||| || | || | | || ||| Sbjct 13838 GGGGTGAAGCCGACGTCGCCAAGGGCGTTCTCGACCTCCTTGCGGG---GAGTG---TCC 13891 Query 334080 TTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCATGTTAGAATCGGACCCGTCG 334139 || | | ||||| | |||||||| | | | || | || || || | | Sbjct 13892 TTCAGGTCGTCATCGATCAGGATGAAGTCGACCACCGACAGCTCAGCCTCCGAAGCCTGC 13951 Query 334140 AGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTTCAAGCTGA 334199 || | ||| || ||| | |||| |||| | ||| |||||| || || ||||| Sbjct 13952 AGGTTGTGCTCGACGAACACAGTCTTCAGCTCGTCCTTGCTGGGGAAGCCCTCGAGCTGG 14011 Query 334200 CCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACACAGACCG 334259 ||||| |||| |||||||| || || || ||||| ||||| || || ||||||||| Sbjct 14012 CCGTTGGCAATGGCGCGCATGAGCGTCGACTTACCACAACCGTTGGGGCCGCACAGACCG 14071 Query 334260 TAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTCCACCATAT 334319 || |||| |||||||| || | || | |||||||| ||||| | ||||| || Sbjct 14072 TAACGGTGGCCACGCTTGAGGCGAAGACGGGCGTTGTTCAGCAGAATCATACCACCGTAG 14131 Query 334320 GCCAGAGAAAATTCACAATCACACAGATC 334348 || || || || || || | ||||| || Sbjct 14132 GCAAGCGAGAACTCGCAGTTGCACAGGTC 14160 >seq4292 Length=2137 Score = 111 bits (122), Expect = 3e-19 Identities = 278/412 (67%), Gaps = 8/412 (2%) Strand=Plus/Plus Query 243318 CGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGG 243377 ||| || || ||| | || || || |||||| ||||||| ||||| ||| || Sbjct 466 CGTGGAGGGCATTTTCTTCTCGGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGG 525 Query 243378 TGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCA 243437 | ||||||||||| | | || |||||| | ||||| || |||||||| | ||| Sbjct 526 CCTCATGCCTGGCCTGAGCTTCTCGAACGAGCTGATCAGCCGTGACGAGGGTATGCACAC 585 Query 243438 ACAGTTCG-GTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAAACG-GTC 243495 | |||| ||| || ||||| || ||||| ||||||||| || || || || Sbjct 586 GGACTTCGCGTGC-CTCATGTACTCCAAGCTGGTGAACAAGCTGCCGGA-GAGCCGCGTG 643 Query 243496 AAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCA 243555 | | || | || || || | | ||| | || ||| | ||||| | | || Sbjct 644 CACGAGATTGTGCGCGACGCGGTGGTGATCGAGCACGAGTTCGTGCGCGACTCGCTCCC- 702 Query 243556 TGCCG-GCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGA 243614 || | ||| || ||||||||||| | |||||| | ||||||||||| ||||| ||||| Sbjct 703 TGTGGAGCTGATCGGCATGAACTCGGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGA 762 Query 243615 CCGCATTTTCATCGCGCTTGGTTATGAGAAAG-TGTACAACTCCAAGAACCCCTTTGCCT 243673 ||| | | | ||| ||| | || |||| | |||||| |||||||| || | || Sbjct 763 CCGTCTGCTGTACTCGC-TGGGTGTGCCAAAGATCTACAACGTGAAGAACCCGTTCGACT 821 Query 243674 TTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 ||||| | || || || || || || || ||||||||||| ||||| || Sbjct 822 GGATGGACATGATCTCTCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGT 873 >seq4320 Length=1636 Score = 107 bits (118), Expect = 4e-18 Identities = 262/386 (68%), Gaps = 12/386 (3%) Strand=Plus/Minus Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 |||||| ||||||| ||||| ||| || | |||||||| || | | || ||| Sbjct 1625 TTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTGAGCTTCTCGAAC 1566 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCAAA 243464 ||| ||||||| || ||||| || | ||| | |||| ||| || ||||| || || Sbjct 1565 GAGCTCATCAGCCGAGACGAAGGTATGCACACGGACTTCGCGTGC-CTCATGTACTCGAA 1507 Query 243465 GCTCCAGAACAAGCTACCATTCGAAA--CG-GTCAAACAAATCATCACAGAAGCAGTTGA 243521 |||| |||||||| || ||||| || || | | ||| | || || || | Sbjct 1506 GCTCGTCAACAAGCTGCC---CGAAAGCCGCGTGCACGAGATCGTGCGCGACGCGGTGGT 1450 Query 243522 AAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCG-GCTTATTGGCATGAACTCTG 243580 | || | || ||| | ||||| | | || || | ||| |||||||||||||| | Sbjct 1449 GATTGAGCACGAGTTCGTGTGCGATTCGCTGCC-TGTGGAGCTCATTGGCATGAACTCGG 1391 Query 243581 AACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATG 243640 |||||| | ||||||||||| ||||| || |||||| | | | | | ||| || Sbjct 1390 CGCTCATGTGCCAGTACATCGAGTTCGTGGCGGACCGCCTGCTGTACTCAC-TGGGCGTG 1332 Query 243641 AGAAAG-TGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGG 243699 ||| | |||||| ||||||||| || | || ||||| | || ||||| || || Sbjct 1331 TCCAAGATCTACAACGTCAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGGC 1272 Query 243700 AAAACTAACTTCTTCGAAAAGCGTGT 243725 || || |||||||| || ||||| || Sbjct 1271 AAGACCAACTTCTTTGAGAAGCGCGT 1246 >seq164 Length=75961 Score = 104 bits (114), Expect = 5e-17 Identities = 307/466 (66%), Gaps = 8/466 (2%) Strand=Plus/Plus Query 297253 TGGATTGTAACTAGGGATATTAGTCGACCAACCGGTACCGATTCCACTCGAACCATTCAC 297312 ||||| || | ||||||| | |||||||| |||||||| || || ||||| | Sbjct 14967 TGGATGGTGGCAAGGGATAGATGAAGACCAACCCGTACCGATACCCTCCGCGCCATTAAT 15026 Query 297313 CAGAATGCTCGGAATAACAGGCACATAATACTCTGGTTCGATCTTGTCACCGTCATCATA 297372 || | | || || | |||||| || ||| | || || | | ||| || |||| Sbjct 15027 GAGCAGCATTGGGATGATAGGCACGTAGTACACGGGCTCAACTGGGAAACCATCGTCAT- 15085 Query 297373 CAG-ATATTTCAGAAGATTATCGTCCGTATCGACGAAAACCTGTCGAGTCTGAGGGTTCA 297431 ||| |||| ||| ||| ||| || || ||| ||| || || || | | Sbjct 15086 CAGCATATCGCAGCAGAGCATCATCTTCCTCAGGGAATACCAAACGTGTGTGCTTTTGAA 15145 Query 297432 GTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGA 297491 | | ||||||||||| || | || || |||||| || |||||||| | | |||| Sbjct 15146 GAATCGTGAAAATATAACGAGGGCTTGCTGCATCCTTGCCTCCCTGCAAACGAGTTCCGA 15205 Query 297492 ACTGGCCCTCCGGCAACAACCAGTTG-ATGTTATTGCTTCCGACATAATCCTGTGCAAGG 297550 ||||||| ||| || | ||| | | ||| || || || ||||||| || | | Sbjct 15206 ACTGGCCGGACGGATAC-AGCAGCGGAAGGTTGTTAGAACCCACGAAATCCTGCGCCATG 15264 Query 297551 TTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATG--CTCTGCAA 297608 || || || || |||| || | ||||| ||||| ||||| |||| | ||||| Sbjct 15265 TTTACAATTGTAGAGTGCAATGAAGTCTCGCCGTGGTGGTAGGCCGTATGTTCACTGCA- 15323 Query 297609 CGTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAAT 297668 |||||| | ||| || |||||||| ||| |||||| |||||||| | | | | Sbjct 15324 -GTAACCAGCAAGCTGCGCCACCTTCACCTCGCTCGTCAGCTTGCGCTTCAGACAAGCAA 15382 Query 297669 ATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGG 297714 ||| ||| || || || || ||||| |||||| || || ||||| Sbjct 15383 ATAGCACCTTACGCTGTGAGATTTTGAGACCATCGACCACTGACGG 15428 Score = 104 bits (114), Expect = 5e-17 Identities = 107/139 (77%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 298315 TGCCACGGATGCATCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCT 298374 ||| || | ||||||||| ||||||| ||||||||||||||||||||| || |||||| Sbjct 16080 TGCAACAGTTGCATCGCGCACATTCAGTAGTTTTCCACGAAGAGGGAAAACGCCATATTG 16139 Query 298375 CTCGCGACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGT 298434 || || ||||| || | ||| || || | |||||||| | || ||||| || || || Sbjct 16140 GTCACGTCCGACAACTGCCAGTCCAGCCACTGCAAGTGCCTTAGCTGAATCACCTTCTGT 16199 Query 298435 CAGAATGAGAGTGCACATT 298453 ||| || |||| ||||| Sbjct 16200 CAGGAT--AAGTGAACATT 16216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102798367234950