Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq476 253 2e-62 seq4292 185 1e-41 >seq476 Length=26050 Score = 253 bits (280), Expect = 2e-62 Identities = 1108/1731 (64%), Gaps = 48/1731 (3%) Strand=Plus/Minus Query 113602 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGACAACTT 113661 ||||||||| || ||||||||||||| ||||||||| || | |||||||| | | ||| Sbjct 4813 GTAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGACGTGAGCTT 4754 Query 113662 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 113721 | || || || | ||| || ||| | || || ||| || || Sbjct 4753 GCTGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAATGTAGGCACC 4694 Query 113722 ACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAG 113781 || || |||| || || | || ||||| |||||| |||||||| || |||| Sbjct 4693 GCGGTCGGCCGACAAGTCCAGTACTGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTT 4634 Query 113782 GTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCTTGACCAT 113841 | ||| | | ||| ||||| || | || || | |||||| || | || | || Sbjct 4633 CTCCTTGACGTGATCGGGGATGGCCTTCACCTTCTGCACGGAGCCGCCGTCGTTCAGGAT 4574 Query 113842 GAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTT 113901 ||| || || || ||||| || | || |||| |||| || || | ||| Sbjct 4573 CTGATTGCGCACGTCGGGTGTCCAGATGCCCAGCTCAATGAGCTCCTTCATCAGGTACTT 4514 Query 113902 ATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGG 113961 || || | |||||||| || || || | || || |||| |||||| || Sbjct 4513 GTTCACGATCGTGAACTCACCGGCCAGCACACGGCGGTTGTACATGTTGGACGTGTAGGG 4454 Query 113962 CTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCAT 114021 ||| | | |||| ||||| || | ||| ||||| ||||| || ||||||||||| |||| Sbjct 4453 CTCGATGGACTCGTTGTTGCCTAGGATCTGGGCCGTGGAAGCCGTGGGCATGGGGGCCAC 4394 Query 114022 GAGAAGGCTGTTACGGAGACCCT-TTTCCCTAATGCGTTC--CTTGAGGGCGTCCCAGTC 114078 || || ||| || ||||| | ||| | | ||||| |||||| || |||||| Sbjct 4393 CAGCAGCGAGTTGCGAAGACCGTGTTTGACCA---CGTTCTCCTTGAGCGCCGCCCAGTT 4337 Query 114079 GTAGTT----GAG--CTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGA 114132 || ||| | || | ||| ||||| || ||||||| ||| || | | Sbjct 4336 CCAGAGACCCGAGGACGGGGTGACGCCC---CACATGTCGAACTGGAAGATCCCCTTGCT 4280 Query 114133 GGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCC--GCCAAT-TCGGAGCT 114189 ||| ||||| |||| || |||||||| ||||| | |||| | |||| || | Sbjct 4279 GGCCGGCGAGCCCTGGAACGTCTCGTAGGGGCCG---AGCTCCTTGGCAATCTCCATGGA 4223 Query 114190 CGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTC 114249 || ||||| ||| |||| || || ||||| || ||| || | | ||||| Sbjct 4222 CGTCTCGACGGCGGCGTAGTAGATCGTCTCGAAGATGTTCTTGTTGAGCTCGCGGGCCTG 4163 Query 114250 GTCGGAATCAAACGCG-AGTCGGCACAAA-ATAAATACATCCGCGAGACCTTGGACACCG 114307 ||| || |||||| ||| || | || || | |||||||| || ||||| ||| Sbjct 4162 CTCGCTCTCGAACGCGTAGTT--CATGAGGATGAAGGCGTCCGCGAGGCCCTGGACGCCG 4105 Query 114308 AGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTC 114367 | ||| || ||||| || | ||| || ||||| || || ||||||| || | || Sbjct 4104 ATGCCGATGGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCGGCCACGGGGTAGTAGTTG 4045 Query 114368 CTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCG 114427 ||||| ||| | || || || ||| || ||||| |||| || | || || | | Sbjct 4044 ACGTCGATGACCTTGTTGAGGTTGCGGGTCACCACCTTGGTGACCTCGTAGAGTTTCTGG 3985 Query 114428 TAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTA 114487 || || || || | || | || |||| || || || | || ||||| || Sbjct 3984 TAGTCGAACACGC------CGTCGTCCACGAACTTGGGCAGCGCCACGGAGGCCAGGTTG 3931 Query 114488 CACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT--TGAAC 114545 ||||| | ||| || |||||||| || | || |||| || || | Sbjct 3930 CACACGGCCACCTCGTCGGGGGACGTGTACTCCATCACCTCGCAGCACAGGTTGCTGGAG 3871 Query 114546 TCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCA 114605 |||||||| | ||||| || || ||||| ||| ||| |||||||| |||| Sbjct 3870 CGG--ATGGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGGCCGCGTCCTTGTAGAGCA 3813 Query 114606 TGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCGGCTG 114665 || | ||| |||||||| | || | | || || || ||| || | || || Sbjct 3812 TGAAGGGCACGCCCGTCTCGATCTGCGCGTCCAGGATGGCGAACCA--CAGCTGCTGCGC 3755 Query 114666 GCACAGTGGCGTTG---GCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACT 114722 | | ||| ||| || || ||||| ||||||||| ||||||| ||||||| Sbjct 3754 GTTGA-TGGTCTTGCGGGCGCGGCCCTCGCGCTCGTACTTGTCGTAGAGGCTCTCAAACT 3696 Query 114723 CTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGAC 114782 | || ||| | ||| ||||||| || |||| | |||||||| | | ||| | | Sbjct 3695 CGTCCCCCCAGCACTCGTAGAGCCCGGGGGCCTCGTTGGGGCAGAACAAACTCCACTTGC 3636 Query 114783 CACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATC-C 114841 | |||| || ||||||||||| ||||| || | ||| || || |||| || || | Sbjct 3635 CGTTGGCCTCCACGCGCTTCATGAACAGGTCGGGCACCCACAGCGCGTAGAACAGGTCGC 3576 Query 114842 CGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCC 114901 | || | || | || | || || || |||| |||| || || | | || Sbjct 3575 GGGCACGGTGCAGC-TCGTTGCCGTGGTTCTTGCGCAGGTCCAGGAACTCGAACACGTCG 3517 Query 114902 GCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTT 114958 |||||||| || || ||||| | |||| ||||| || | || |||||| Sbjct 3516 GCGTGCCAGGGCTCGAGGTAGATGGCGAAGCTGCCCTTGCGCTTGCCGCCGCCCTGGTCC 3457 Query 114959 ACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCA 115018 || |||| || ||| | || || ||||| ||||| || ||||| || | || ||| Sbjct 3456 ACGTACCGGGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATGCCGTTGGAGGAGCCG 3397 Query 115019 TTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAATACCC 115078 || || || ||||| || |||| | | | || ||| || || |||||| Sbjct 3396 TTGGTGCCGCGAATGTAGCTGTTGGTGGCACGAATGTTGTGCATGCTGATGCCGATACCC 3337 Query 115079 CCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAG 115138 || |||||||| ||||| ||||||| | |||| || | ||||| || ||||| ||| Sbjct 3336 CCCGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGATACCCTCGATGGAG 3277 Query 115139 TCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTG 115198 || ||| | || | ||||||||| |||| || || | || || || ||||| Sbjct 3276 TCGTCCTGCATGGCCAATAGGAAGCAGGAGGACAGCTGCGGACGCGGCGTTCCGGCGTTA 3217 Query 115199 AAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCGTAGGTCTCCAA 115257 || || || || |||||||| |||| | || | || ||||| ||||| ||||||| Sbjct 3216 AACAGCGTCGGCGTCGCGTGCGTGAAGA-ACTTCTGCGACATGAGCTCGTACGTCTCCAG 3158 Query 115258 GACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACAT 115308 |||| | ||||| || ||| || || | || || ||||||| ||| Sbjct 3157 CGCGGCCTGGATGTCGGCCTTGTGGATGCCCAGCGCCACGCGCATAATCAT 3107 >seq4292 Length=2137 Score = 185 bits (204), Expect = 1e-41 Identities = 539/820 (66%), Gaps = 20/820 (2%) Strand=Plus/Minus Query 125752 CTTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT 125811 |||| ||| || || || ||||||||||||||||| ||||| || | | ||| | Sbjct 889 CTTGGAGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGAGAGATCAT 830 Query 125812 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG 125871 ||||| | || || |||||||| ||| | || ||||||| || | | | || Sbjct 829 GTCCATCCAGTCGAACGGGTTCTTCACGTTGTAGATCTTTGGCACACCCAGCGAGTACAG 770 Query 125872 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 125931 ||||| || | ||| |||| ||||||| |||| | | |||||||| ||||| || Sbjct 769 CAGACGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAG 710 Query 125932 GTT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGA 125990 | ||| ||||||| ||| | |||| | | ||| || |||| || || ||||| | Sbjct 709 CTCCACA-GGGAGCGAGTCGCGCACGAACTCGTGCTCGATCACCACCGCGTCGCGCACAA 651 Query 125991 TGGCGTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC------CA 126044 | |||| | | | | || || ||| || |||| |||| | || Sbjct 650 TCTCGTGCACGCGGCTCTCC---GGCAGCTTGTTCACCAGCTTG--GAGTACATGAGGCA 596 Query 126045 CGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTC 126104 || | || || ||| | ||||||||||||| ||| || || |||||||||| ||| | Sbjct 595 CG-CGAAGTCCGTGTGCATACCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGC 537 Query 126105 CTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGA 126164 | |||||||| || |||||||| | |||||| || | || || || ||||||||||| | Sbjct 536 CAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAAA 477 Query 126165 TTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGAC-TTTGTGTCA 126223 | |||||||| |||||||| | |||||||| | | || || || | ||| Sbjct 476 TGCCCTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTACGA-CGACACACGCGGGTCG 418 Query 126224 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCA 126283 ||||||| | |||||| ||||| || |||| | ||||||| |||| ||| || Sbjct 417 CACCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACGCACGGGATCGTCTCGATGGCGCGC 358 Query 126284 AAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTT 126343 | || | | ||| || | || ||||||||| |||| ||||| || || Sbjct 357 AGCAGGTGGTCCTTCTCCACGGCGTCCTTGATGTACGTATCAATGAGCAGCGAGTACACC 298 Query 126344 TCGCCGTGGACCATTTCATTATGGC--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTTA 126401 ||| |||||| ||| ||||| ||| | ||||||| |||| | ||| | Sbjct 297 TCGGCGTGGA--TGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGGACCTCGGGCA 240 Query 126402 TCTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAG 126461 ||| || |||| | || || | | ||||| ||||| || ||| | ||| Sbjct 239 CCTGCACTTCATTGCTGAAGTTCATGGCCAGGTTCTCGTTCACAATACCGTCGCTCGCAG 180 Query 126462 CAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGT 126521 | || |||||||| | | ||| ||||| | | || || || ||||| || ||||| Sbjct 179 CGAAGAACGCCAGCACGTGCTTGATGAAGAACCGCTCGTTGTCCGTCAGGTTCGCCCAGT 120 Query 126522 CGTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 126561 | | || || | | || || | |||||| || ||||| Sbjct 119 CCTTGAGGTCGTGCACCAGGTCCAGCTCCTCGGCCGTCCA 80 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597310463603160