Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq6 136 4e-27 seq745 122 9e-23 seq45 116 4e-21 >seq6 Length=256829 Score = 136 bits (150), Expect = 4e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||| |||| || |||||| || || ||||| || ||| || || | Sbjct 246170 ACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCC 246111 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| |||||||| || || ||||||||||| | || | || |||||| Sbjct 246110 GTCTTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTT 246051 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| || || || || | ||| | | | || ||| || ||||| |||| ||||| Sbjct 246050 GTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGA 245992 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| |||||||| ||||||||||| ||||| ||||| Sbjct 245991 TGGTCTTGCCCGTCAGCGTCTTTACGAAGATCTGCAT 245955 >seq745 Length=17434 Score = 122 bits (134), Expect = 9e-23 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| || || ||||| || | || || || |||| || |||||||| || ||||| | Sbjct 12114 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 12055 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | | ||||||||||| | || | || |||||||||| |||||| || |||| | | | Sbjct 12054 TCAAGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 11996 Query 42139 CCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 || | ||||| || ||||| || | ||||||||| |||||||| || ||||| ||| Sbjct 11995 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 11936 Query 42198 AAGATTTGCAT 42208 ||||| ||||| Sbjct 11935 AAGATCTGCAT 11925 >seq45 Length=78880 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || ||| || || |||| || |||||||| |||||||| Sbjct 57250 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAA 57191 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | || ||||||||| |||||| || || | ||| Sbjct 57190 GATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCA-CGT 57132 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || ||| || ||||| || | |||||| || ||||| || |||||||| | Sbjct 57131 TGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCA 57072 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 57071 CGAAGATCTGCAT 57059 Score = 114 bits (126), Expect = 1e-20 Identities = 145/197 (74%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || |||| || |||||||| |||||||| Sbjct 57022 CTCCTTCTGGATGTTGTAGTCGCTCAACGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAA 56963 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | || ||||||||| |||||| || || | ||| Sbjct 56962 GATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCA-CGT 56904 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || ||| || ||||| || | |||||| || ||||| || |||||||| | Sbjct 56903 TGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCA 56844 Query 42196 CAAAGATTTGCATTTTC 42212 | ||||| ||||| ||| Sbjct 56843 CGAAGATCTGCATCTTC 56827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543173573245680