Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq495 149 3e-31 >seq495 Length=27618 Score = 149 bits (164), Expect = 3e-31 Identities = 389/588 (66%), Gaps = 14/588 (2%) Strand=Plus/Plus Query 65973 CGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCG 66032 || || |||||||||||||| || ||| || || ||| | |||||| || | Sbjct 12677 CGTGTGGTGGAGATCTACGGCCCCGAGAGCTCTGGCAAGACGACGTTGGCGCTGAGCTGC 12736 Query 66033 GTGGCCAATGCCCAGAAGGCCGGTGGCAACGCC---GCCTACATCGACGCCGAACATTCT 66089 | || | ||||||||| ||| ||| | | || | |||||| || || ||| | Sbjct 12737 ATTGCTGAGGCCCAGAAGACCGAGGGCGGAGTCTGCGCATTCATCGATGCTGAGCATGCC 12796 Query 66090 CTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAG 66149 | ||| | | |||||| ||| ||||| || || ||||| || || |||| Sbjct 12797 ATTGACGCCCATTACGCCAAGGCTCTCGGCGTCGACATCGACGCGCTGTACGTCTCGCAG 12856 Query 66150 CCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTT 66209 || ||| | ||||| | || || ||||||| ||| ||| ||| ||| || | ||| Sbjct 12857 CCCGACTCGGGCGAAGAAGCTCTTGAGATCGCCGACACGCTCATCAGGTCGGGAGCGGTG 12916 Query 66210 TCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGAC 66269 | || | || ||||| |||||| || ||||||||||| |||||||| ||||| || Sbjct 12917 GACCTCGTGGTGCTGGACAGTGTGGCAGCTCTGGTGCCGCGAGCGGAGCTGGAAGGTGAA 12976 Query 66270 ATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTG 66329 || || ||| ||| | | ||||| || || || ||| |||||| |||| |||||| Sbjct 12977 ATGGGCGACCAGCAGATTGCGCTGCAGGCGCGACTCATGAGTCAGGCGCTGCGGAAGCTG 13036 Query 66330 ACCGGCACGATTGCCAGCACCAAC-ACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAA 66388 || || || | ||| ||||| | || | | | |||| ||| | ||| |||| Sbjct 13037 ACGGGGTCGCTGTCCAAGTCCAACTGCACT-ATTATCTTCCTGAACCAGATCCGCCAGAA 13095 Query 66389 GATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTT 66448 | | |||| | || ||| | |||| || | || || | || |||||| Sbjct 13096 GGTTGGCA---TTATCTTCGGATCTCCTGAGGTGACGTCAGGCGGCACTGCCTTGCGCTA 13152 Query 66449 CTACGCCTCGGTGCGTATGGA---TGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGA 66505 ||||| || ||||| |||| | || | || |||| | |||||||| || | Sbjct 13153 TTACGCGTCTGTGCGGTTGGACATTCGTCGTAAGACGGCCATC---AAGGAAGGTGACCA 13209 Query 66506 GGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGC 66553 || |||||||||| ||| |||||||| | ||||||||||||||| Sbjct 13210 GGTTGTCGGCAACGAGACGGTGGTGAAGGTGGCCAAGAACAAGCTGGC 13257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242453328341084