Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq476 509 2e-139 >seq476 Length=26050 Score = 509 bits (564), Expect = 2e-139 Identities = 1129/1684 (67%), Gaps = 53/1684 (3%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 || || ||||| ||||| ||||| || || ||| || ||| |||| || || ||||| Sbjct 3200 GCGACGCCGACGCTGTTTAACGCCGGAACGCCGCGTCCGCAGCTGTCCTCCTGCTTCCTA 3259 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || | | ||| |||||||||| || || | |||| |||||| | || || | Sbjct 3260 TTGGCCATGCAGGACGACTCCATCGAGGGTATCTATGACACGCTCAAGCAGTGCGCCTGC 3319 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || | |||||||| ||||| ||||| | ||| || | ||||||| | Sbjct 3320 ATCTCCAAGTGGGCGGGGGGTATCGGCATCAGCATGCACAACATTCGTGCCACCAACAGC 3379 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||| ||||| ||||| ||| ||||||||||| || |||| ||||| || || |||||| Sbjct 3380 TACATTCGCGGCACCAACGGCTCCTCCAACGGCATCATCCCCATGCTGCGCGTGTTCAAC 3439 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 || |||| || |||||||||||||| || || | | | ||||| ||||| |||| Sbjct 3440 GACACGGCCCGGTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCAGCTTCGCCATCTAC 3499 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 ||||||||||||||||| |||||| | ||| | |||||||| ||||||||||||||| Sbjct 3500 CTCGAGCCCTGGCACGCCGACGTGTTCGAGTTCCTGGACCTGCGCAAGAACCACGGCAAC 3559 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || ||| | | ||| | ||||| |||||||| || |||||||| ||||| || ||||| Sbjct 3560 GAGCTGCACCGTGCCCGCGACCTGTTCTACGCGCTGTGGGTGCCCGACCTGTTCATGAAG 3619 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 ||||| ||| ||| | |||||| | || || ||||| || ||||| || | | Sbjct 3620 CGCGTGGAGGCCAACGGCAAGTGGAGTTTGTTCTGCCCCAACGAGGCCCCCGGGCTCTAC 3679 Query 94372 GA-CGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGC-AGGGCAAGG 94429 || | | | || || | ||||| | | || | |||| | ||| ||||| | Sbjct 3680 GAGTGCTGGGGGGACGAG-TTTGAGAGCCTCTACGACAAGTACG-AGCGCGAGGGCCGCG 3737 Query 94430 CCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGA 94489 || | ||| || | || | |||||||| ||| |||||| ||| | |||| Sbjct 3738 CCCGCAAGACCATCAACGCGCAGCAGCTGTGGTTCGCCATCCTGGACGCGCAGATCGAGA 3797 Query 94490 CGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACC 94549 |||| ||||| ||| | | ||||||| | | |||| |||||||||||||||| ||| Sbjct 3798 CGGGCGTGCCCTTCATGCTCTACAAGGACGCGGCCAACCGCAAGTCCAACCAGCAGAACC 3857 Query 94550 TCGGGGTGATCAAGAGCTC---GAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGG 94606 |||| | || |||| || |||||| |||| | | ||||| || || || | Sbjct 3858 TCGG---CACCATCCGCTCCAGCAACCTGTGCTGCGAGGTGATGGAGTACACGTCCCCCG 3914 Query 94607 ACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCT 94666 ||||| | || ||||| ||||||| |||| | ||| ||| |||||| Sbjct 3915 ACGAGGTGGCCGTGTGCAACCTGGCCTCCGTGGCGCTGCCCAAGTTCGTG---------- 3964 Query 94667 ACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCT 94726 | | || || | |||||| || | || || || || | | ||| Sbjct 3965 ----GACGACGGCGT-GTTCGACTACCAGAAACT------CTACGAGGTCACCAAGGTGG 4013 Query 94727 TG------AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGA 94780 || ||||| |||| ||| |||||| |||| ||||||||| | |||||| | Sbjct 4014 TGACCCGCAACCTCAACAAGGTCATCGACGTCAACTACTACCCCGTGGCCGAGGCGCGCA 4073 Query 94781 ACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGG 94840 | || ||| || || || ||||||||||||||||||||||| |||||||||| | Sbjct 4074 AGTCCAACATGCGCCACCGCCCCATCGGCATCGGCGTCCAGGGCCTCGCGGACGCCTTCA 4133 Query 94841 TGATGATGCGTCTGC-CCTACGACTCTGTCGACG-CGGCGGGTTTGAATTTGAACATATT 94898 | | ||| || | | | ||| | | | | ||| | | || |||||| || Sbjct 4134 TCCTCATG-AACTACGCGTTCGAGAGCGAGCAGGCCCGCGAG-CTCAACAAGAACATCTT 4191 Query 94899 CGAAAGCATTTATTACGGGGCCAT-GAAACAATCCGTCCACTTGGCCAGATCGGACGGCG 94957 ||| | || || |||| ||| | || || ||| | | | |||| ||| || Sbjct 4192 CGAGACGATCTACTACGCCGCCGTCGAGAC-GTCCATGGAGATTGCCA---AGGAGCTCG 4247 Query 94958 GGCCACACGAATCGTTCCGCGGATCGCC--CTTGGAACAGGGCATTTTTCAGTTCGACCT 95015 | || |||| |||||| || ||||| | | | |||| || || ||||||||| | Sbjct 4248 GCCCCTACGAGACGTTCCAGGGCTCGCCGGCCAGCA--AGGGGATCTTCCAGTTCGACAT 4305 Query 95016 CTGGGGTGTGA---AGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTAT 95072 ||||| || | | |||||||||| | |||||| || || | | || | Sbjct 4306 GTGGGGCGTCACCCCGTCCTCGGGTCTCTGGAACTGGGCGGCGCTCAAGGAGAACGTGGT 4365 Query 95073 CAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCA 95132 |||||||||| | ||| ||||||| |||||||||||||||||||| |||||||| || Sbjct 4366 CAAACACGGTCTTCGCAACTCGCTGCTGGTGGCCCCCATGCCCACGGCTTCCACGGCCCA 4425 Query 95133 GATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGT 95192 |||||| |||||||||||||| |||| |||| ||| |||||| |||||||| | || || Sbjct 4426 GATCCTAGGCAACAACGAGTCCATCGAGCCCTACACGTCCAACATGTACAACCGCCGTGT 4485 Query 95193 GCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGG 95252 ||| ||||| || ||| | || | |||||| |||| | ||| || | ||||| Sbjct 4486 GCTGGCCGGTGAGTTCACGATCGTGAACAAGTACCTGATGAAGGAGCTCATTGAGCTGGG 4545 Query 95253 TGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACAT 95312 | ||| | | || || || | || || | ||||||||| ||||| | Sbjct 4546 CATCTGGACACCCGACGTGCGCAATCAGATCCTGAACGACGGCGGCTCCGTGCAGAAGGT 4605 Query 95313 CCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372 | || || || || |||||| | |||||||| |||||||||||| |||| Sbjct 4606 GAAGGCCATCCCCGATCACGTCAAGGAGAAGTACAAGACGGTGTGGGAGATCAAGCAGAA 4665 Query 95373 CGTGATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNNN 95432 | |||| ||| |||||| |||||| ||| ||| |||||||| Sbjct 4666 GGCAGTACTGGACTTGTCGGCCGACCGCGGTGCCTACATTTGCCAGAGTCAGTCGCTCAA 4725 Query 95433 NNNNNNNATGGCCGAGCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGGTGGAG 95492 || ||||| || | | | || | ||||| ||| ||||||| |||| Sbjct 4726 CATCCACATCGCCGACCCGACCATCAGCAAGCTCACGTCGATGCACTTCTACGCCTGGAA 4785 Query 95493 AAAGGGTCTCAAGACCGGTATGTATTATTTGCGAACCAGGCCAAAGGCGGACTCCATACA 95552 ||||| ||||||||||| ||||| || |||| | || || || ||| |||| | Sbjct 4786 GAAGGGGCTCAAGACCGGCATGTACTACATGCGCGGACGCCCGAAAGCCGACGCCATCAA 4845 Query 95553 GTTC 95556 |||| Sbjct 4846 GTTC 4849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494687474800920