Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq677 104 2e-17 seq129 82.4 6e-11 >seq677 Length=28329 Score = 104 bits (114), Expect = 2e-17 Identities = 185/270 (69%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 108336 CGTAGCCGGGTTCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAA 108395 ||| ||||| | || | ||||| |||| || || ||||| | ||| | |||||| Sbjct 10205 CGTGGCCGGCCTGGGCATCACGGCGGGCGCGCACCGCCTGTGGTCGCACCGCGGCTACAA 10264 Query 108396 GGCCACCGCCCCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACAC 108455 ||||| ||| | | |||||||| ||| ||| ||| |||| || ||| Sbjct 10265 GGCCAAGCTGCCGCTGCGCGTGTTCCTCATGCTGTGCAACTCCATGGCCTTCGAGGGCAC 10324 Query 108456 CATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGA 108515 |||| ||||| || ||| ||| | || ||||||||| ||| |||||||||||||| Sbjct 10325 CATCTTCGAGTGGTCGCGCGACCACCGCGTGCACCACAAGGCCTCGGACACGACGGCCGA 10384 Query 108516 CCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAA 108575 ||| |||||| | | | || ||| ||||||||| |||| ||| ||||| || ||| Sbjct 10385 CCCGCACAACTCGGGCCGCGGCCTCTTCTTCTCGCACATGGGCTGGGTCATGGTGCGCAA 10444 Query 108576 GGACCCCGACGTGATCTCGGCCGGTCGAAA 108605 | || ||||| | | ||||| || || Sbjct 10445 GCACAAGAACGTGCGCGCCGCCGGCCGCAA 10474 >seq129 Length=56288 Score = 82.4 bits (90), Expect = 6e-11 Identities = 110/152 (72%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 108453 CACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGC 108512 ||||||| || ||| | ||| ||| | || |||||||||||||| ||||||| || Sbjct 31989 CACCATCTTCCACTGGAGCCGCGACCACCGCGTGCACCACAAGTACTCGGACACGAGCGC 31930 Query 108513 CGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGAC 108572 ||| || |||||| | | | || |||| ||| ||||| |||| ||||| || | | Sbjct 31929 CGATCCGCACAACTCGGGCCGCGGCTTCTTCTTCGCGCACATGGGCTGGCTGCTGGTCAA 31870 Query 108573 CAAGGACCCCGACGTGATCTCGGCCGGTCGAA 108604 ||||||||| | ||| || ||| || |||| Sbjct 31869 GAAGGACCCCAAGGTGGTCAAGGCAGG-CGAA 31839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381745920450888