Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq6 143 3e-29 seq45 134 1e-26 seq476 125 7e-24 seq745 107 2e-18 seq4320 102 8e-17 seq4292 102 8e-17 >seq6 Length=256829 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | ||||||||| || || || ||||| |||| | Sbjct 246181 CCACCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 246122 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || |||||| |||||| |||||||| || || || Sbjct 246121 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGG 246062 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| || |||||||| | |||| |||| | ||||| ||| || Sbjct 246061 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTG-TCGATCGAGTCCGACGGCTCCAC 246003 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | || ||||| ||||| || ||||| || |||||||| Sbjct 246002 GTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTTACGAAGATCTGCAT 245955 >seq45 Length=78880 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || || ||||| |||| | Sbjct 57057 CCACCACGCAGGCGAAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTC 56998 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || |||||| |||||| |||||||| || || || Sbjct 56997 AACGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 56938 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||||||||| |||||||||||| | ||||| ||| | ||||| ||| || Sbjct 56937 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGT-CGATCGAGTCCGACGGCTCCAC 56879 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||| ||||||||||| || || || || |||||||| Sbjct 56878 GTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 56831 Score = 132 bits (146), Expect = 5e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | || | ||||| || | || ||||| || || || ||||| |||| Sbjct 57286 TCCGCCACGAAGACGAAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCT 57227 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || |||||| || || ||||| || |||||| |||||| |||||||| || || || Sbjct 57226 CAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 57167 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 |||||||||||||| |||||||||||| | ||||| ||| | ||||| ||| | Sbjct 57166 GATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGT-CGATCGAGTCCGACGGCTCCA 57108 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | || | || | ||| ||||||||||| || || || || ||||||||| Sbjct 57107 CGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 57058 >seq476 Length=26050 Score = 125 bits (138), Expect = 7e-24 Identities = 303/455 (67%), Gaps = 8/455 (2%) Strand=Plus/Minus Query 145758 GCGCAGATAGTACATGCCGGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGA 145817 ||||| ||||||||||||||||||||| |||| ||| | ||| ||||| || ||| Sbjct 4819 GCGCATGTAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCAT---CGA 4763 Query 145818 CATGACCGAGTACGTGG---GTTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAAT 145874 | ||| | | ||| | ||||||| | || || || || ||||| ||| Sbjct 4762 CGTGAGCTTGCTGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAAT 4703 Query 145875 GAAAGGAGCCCGGTCGGCGGCCATGTCTATCA-TGCACTTTGATTTAATTTCCCATGCGG 145933 | | | | | |||||||| | || ||| | | ||| | || || | | ||||| | | Sbjct 4702 GTAGGCACCGCGGTCGGCCGACAAGTCCAGTACTGCCTTCTGCTTGA-TCTCCCACACCG 4644 Query 145934 TTTTAAAGAGATCCTTGACGTGCTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTT 145993 | || | ||||||||||| | ||| || | | | |||||||| || || | Sbjct 4643 TCTTGTACTTCTCCTTGACGTGATCGGGGATGGCCTTCACCTTCTGCACGGAGCCGCCGT 4584 Query 145994 CGGCCAATATTTTGTTGCGCAATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGA 146053 || || || | ||||||| || || || | ||| || || | ||| |||| | Sbjct 4583 CGTTCAGGATCTGATTGCGCACGTCGGGTGTCCAGATGCCCAGCTCAATGAGCTCCTTCA 4524 Query 146054 TGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGC 146113 | || |||| ||| || | | ||||| ||||| || || || | |||| |||| Sbjct 4523 TCAGGTACTTGTTCACGATCGTGAACTCACCGGCCAGCACACGGCGGTTGTACATGTTGG 4464 Query 146114 TGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCA 146173 ||| | ||||||| ||||||||||| || || ||||| ||||| | ||| || |||| Sbjct 4463 ACGTGTAGGGCTCGATGGACTCGTTGTTGCCTAGGATCTGGGCCGTGGAAGCCGTGGGCA 4404 Query 146174 TGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGT 146208 || |||||||||| ||||| | | |||||| Sbjct 4403 TGGGGGCCACCAGCAGCGAGTTGCGAAGACCGTGT 4369 >seq745 Length=17434 Score = 107 bits (118), Expect = 2e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| || | |||||| || || ||||| || || ||| ||||| Sbjct 12112 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 12053 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 || |||||||| || || || ||||||||||||||| |||||||||||||| | || Sbjct 12052 AAGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 11993 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | | |||| | ||| || || | || | || ||||| ||||| || || ||||| Sbjct 11992 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 11933 Query 127106 ATCTGCATG 127114 ||||||||| Sbjct 11932 ATCTGCATG 11924 >seq4320 Length=1636 Score = 102 bits (112), Expect = 8e-17 Identities = 126/169 (75%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGT- 47470 || |||||| ||| | | ||| | |||||||||| || || || ||||||||||| || Sbjct 1403 GGCATGAACTCGGCGCTCATGTGCCAGTACATCGAGTTCGTGGCGGACCGCCTGCT-GTA 1345 Query 47471 -TCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACA 47529 ||| || ||| ||||| ||| || | |||| || ||||| | ||| ||| | Sbjct 1344 CTCACTGGGCGTGTCC-AAGATCTACAACGTCAAGAACCCGTTCGACTGGATGGACATGA 1286 Query 47530 TTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 | ||||| |||||||||||||||| || ||||||||||| ||||| || Sbjct 1285 TCTCGCTGCAGGGCAAGACCAACTTCTTTGAGAAGCGCGTGGGCGAGTA 1237 >seq4292 Length=2137 Score = 102 bits (112), Expect = 8e-17 Identities = 127/169 (75%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471 || |||||| ||| | | ||| | |||||||||| || || |||||||| ||||| || Sbjct 716 GGCATGAACTCGGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTGCT-GTA 774 Query 47472 CA-GCTAAAGTATCCCAA-GATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACA 47529 | ||| || | |||| ||| ||| || |||| || ||||| | ||| ||| | Sbjct 775 CTCGCTGG-GTGTGCCAAAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGACATGA 833 Query 47530 TTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 | || ||| |||||||||||||||| |||||||||||||| ||||| || Sbjct 834 TCTCTCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTA 882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475466462898480