Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq476 96.9 3e-15 >seq476 Length=26050 Score = 96.9 bits (106), Expect = 3e-15 Identities = 291/449 (65%), Gaps = 3/449 (1%) Strand=Plus/Plus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 ||||| | || ||| || || ||| | |||||||| || | ||| | ||| | Sbjct 3083 AAGGTGGTGGAGCGTCCGCAGCAAATGATTATGCGCGTGGCGCTGGGCATCCACAAGGCC 3142 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 |||||| | |||| || || ||||| | ||||| || || || |||||||||||| Sbjct 3143 GACATCCAGGCCGCGCTGGAGACGTACGAGCTCATGTCGCAGAAGTTCTTCACGCACGCG 3202 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 | || || |||| |||||| ||| | || ||| |||| || || || | | Sbjct 3203 ACGCCGACGCTGTTTAACGCCGGAACGCCGCGTCCGCAGCTGTCCTCCTGCTTCCTATTG 3262 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATT 123137 || ||| || ||| |||| ||||||||||| || | | ||||| | || Sbjct 3263 GCCATGCAGGACGACTCCATCGAGGGTATCTATGACACGCTCAAGCAGTGCGCCTGCATC 3322 Query 123138 TCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGC 123197 ||||| | | || || || ||| | | | ||||| || | | | | | ||| | Sbjct 3323 TCCAAGTGGGCGGGGGGTATCGGCATCAGCATGCACAACATTCGTGCCACCAACAGCTAC 3382 Query 123198 ATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAAC 123257 || | ||||| |||| | || ||| || |||||||||| || | ||| || Sbjct 3383 ATTCGCGGCACCAACGGCTCCTCCAACGGCATCATCCCCATGCTGCGCGTGTTCAACGAC 3442 Query 123258 GCCGTGCGGCACGTCGACCAG---GGCGGCAAACGCAAAGGCGCGATGGCGATCTATCTA 123314 | | ||| |||| |||||| |||||||| ||||| ||| | || ||||| || Sbjct 3443 ACGGCCCGGTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCAGCTTCGCCATCTACCTC 3502 Query 123315 GAACCGTGGCACGTTGATGTGTACGATTT 123343 || || ||||||| || |||| ||| || Sbjct 3503 GAGCCCTGGCACGCCGACGTGTTCGAGTT 3531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451970559718920