Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq476 244 1e-59 seq4292 170 2e-37 >seq476 Length=26050 Score = 244 bits (270), Expect = 1e-59 Identities = 1071/1674 (64%), Gaps = 38/1674 (2%) Strand=Plus/Minus Query 115563 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 115622 ||||||||| || ||||||||||||| ||||||||| || | ||||| || | | ||| Sbjct 4813 GTAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGACGTGAGCTT 4754 Query 115623 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 115682 | || || || | ||| || ||| | || || ||| || || Sbjct 4753 GCTGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAATGTAGGCACC 4694 Query 115683 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAG 115742 || || |||| || || | || ||||| |||||| |||||||| || |||| Sbjct 4693 GCGGTCGGCCGACAAGTCCAGTACTGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTT 4634 Query 115743 GTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCAT 115802 | ||| | | ||| ||||| || | || || | ||||| || | || | || Sbjct 4633 CTCCTTGACGTGATCGGGGATGGCCTTCACCTTCTGCACGGAGCCGCCGTCGTTCAGGAT 4574 Query 115803 GAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTT 115862 ||| || || || ||||| || | || |||| |||| || |||| ||| Sbjct 4573 CTGATTGCGCACGTCGGGTGTCCAGATGCCCAGCTCAATGAGCTCCTTCATCAGGTACTT 4514 Query 115863 ATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGG 115922 || || | |||||||| || || || | || ||||||| |||||| || Sbjct 4513 GTTCACGATCGTGAACTCACCGGCCAGCACACGGCGGTTGTACATGTTGGACGTGTAGGG 4454 Query 115923 CTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCAT 115982 ||| | | |||| ||||| || | ||| ||||| ||||| || ||||||||||| |||| Sbjct 4453 CTCGATGGACTCGTTGTTGCCTAGGATCTGGGCCGTGGAAGCCGTGGGCATGGGGGCCAC 4394 Query 115983 GAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA 116042 || || |||||| ||||| | | |||||||| || |||||| | Sbjct 4393 CAGCAGCGAGTTGCGAAGACCGTGTTTGACCACGTTCTCCTTGAGCGCCGCCCAGTTCCA 4334 Query 116043 GTT----GAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTG 116098 | ||| | | | | ||||||| || ||||||| ||| || | | || | Sbjct 4333 GAGACCCGAGGACGGGGTGACGC-CCCACATGTCGAACTGGAAGATCCCCTTGCTGGCCG 4275 Query 116099 GCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC--GCCAAT-TCGGAGCTCGCCT 116155 |||| |||| || ||||| || ||||| | |||| | |||| || | || || Sbjct 4274 GCGAGCCCTGGAACGTCTCGTAGGGGCCG---AGCTCCTTGGCAATCTCCATGGACGTCT 4218 Query 116156 CGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGG 116215 ||| ||| |||| || || ||||| || ||| || | | ||||| ||| Sbjct 4217 CGACGGCGGCGTAGTAGATCGTCTCGAAGATGTTCTTGTTGAGCTCGCGGGCCTGCTCGC 4158 Query 116216 AATCAAACGCGAGACGGCACAAA-ATAAATACATCCGCGAGACCTTGGACACCGAGGCCA 116274 || |||||| | || | || || | |||||||| || ||||| |||| ||| Sbjct 4157 TCTCGAACGCGT-AGTTCATGAGGATGAAGGCGTCCGCGAGGCCCTGGACGCCGATGCCG 4099 Query 116275 ATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCG 116334 || ||||| || | ||| || ||||| || || ||||||| || | || ||| Sbjct 4098 ATGGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCGGCCACGGGGTAGTAGTTGACGTCG 4039 Query 116335 ATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCA 116394 || ||| | || || || ||| || ||||| |||| || | || || | ||| || Sbjct 4038 ATGACCTTGTTGAGGTTGCGGGTCACCACCTTGGTGACCTCGTAGAGTTTCTGGTAGTCG 3979 Query 116395 AAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACA 116454 || || | || | || |||| || || || | || ||||| || ||||| Sbjct 3978 AACACGC------CGTCGTCCACGAACTTGGGCAGCGCCACGGAGGCCAGGTTGCACACG 3925 Query 116455 GAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT--TGAACTCTTAA 116512 | ||| || |||||||| || | || |||| || || | | Sbjct 3924 GCCACCTCGTCGGGGGACGTGTACTCCATCACCTCGCAGCACAGGTTGCTGGAGCGG--A 3867 Query 116513 TGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATG 116572 ||||||| | ||||| || || ||||| ||| ||| |||||||||||||| | | Sbjct 3866 TGGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGGCCGCGTCCTTGTAGAGCATGAAGG 3807 Query 116573 GCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAG 116632 || |||||||| | || | | || || || ||| || | || || | | Sbjct 3806 GCACGCCCGTCTCGATCTGCGCGTCCAGGATGGCGAACCA--CAGCTGCTGCGCGTTGA- 3750 Query 116633 TGGCGTTG---GCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCAC 116689 ||| ||| || || ||||| ||||||||| ||||||| ||||||||| || | Sbjct 3749 TGGTCTTGCGGGCGCGGCCCTCGCGCTCGTACTTGTCGTAGAGGCTCTCAAACTCGTCCC 3690 Query 116690 CCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCC 116748 || |||| ||| ||||||| || |||| | || ||||| | | ||| | || Sbjct 3689 CC-CAGCACTCGTAGAGCCCGGGGGCCTCGTTGGGGCAGAACAAACTCCACTTGCCGTTG 3631 Query 116749 TCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATC-CCGACA 116807 |||| || ||||||||||| ||||| || | ||| ||||| |||| || || | | || Sbjct 3630 GCCTCCACGCGCTTCATGAACAGGTCGGGCACCCACAGCGCGTAGAACAGGTCGCGGGCA 3571 Query 116808 GCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTG 116867 | || | || | || || || |||| |||| || || | | || ||||| Sbjct 3570 CGGTGCAGC-TCGTTGCCGTGGTTCTTGCGCAGGTCCAGGAACTCGAACACGTCGGCGTG 3512 Query 116868 CCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACCAGCCTGGTTTACATA 116924 ||| || || ||||| | |||| |||||||| | || |||||| || || Sbjct 3511 CCAGGGCTCGAGGTAGATGGCGAAGCTGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTA 3452 Query 116925 CCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT 116984 || ||||| |||| || ||||| ||||| || ||||| || | || ||| || || Sbjct 3451 CCGGGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATGCCGTTGGAGGAGCCGTTGGT 3392 Query 116985 CCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGC 117044 || ||||| ||| |||| | | | ||| ||| || || |||||||| || Sbjct 3391 GCCGCGAATGTAGCTGTTGGTGGCACGAATGTTGTGCATGCTGATGCCGATACCCCCCGC 3332 Query 117045 CCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACC 117104 |||||| ||||| ||||||| | |||| || | ||||| || ||||| ||||| | Sbjct 3331 CCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGATACCCTCGATGGAGTCGTC 3272 Query 117105 CTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAG 117164 || | || | ||||||||| |||| || || | || || || ||||| || || Sbjct 3271 CTGCATGGCCAATAGGAAGCAGGAGGACAGCTGCGGACGCGGCGTTCCGGCGTTAAACAG 3212 Query 117165 GGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCGTAGGTCTCCA 117217 || || |||||||| |||| | || | || ||||| ||||| ||||||| Sbjct 3211 CGTCGGCGTCGCGTGCGTGAAGA-ACTTCTGCGACATGAGCTCGTACGTCTCCA 3159 >seq4292 Length=2137 Score = 170 bits (188), Expect = 2e-37 Identities = 538/821 (66%), Gaps = 22/821 (3%) Strand=Plus/Minus Query 127225 CTTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATT 127284 |||| ||| || || || ||||||||||||||||| ||||| || | ||| ||| | Sbjct 889 CTTGGAGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGAGAGATCAT 830 Query 127285 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG 127344 ||||| | || || |||||||| ||| | || ||||||| || | | | || Sbjct 829 GTCCATCCAGTCGAACGGGTTCTTCACGTTGTAGATCTTTGGCACACCCAGCGAGTACAG 770 Query 127345 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 127404 ||||| || | ||| |||| ||||||| |||| | | |||||||| ||||| || Sbjct 769 CAGACGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAG 710 Query 127405 GTT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGA 127463 | ||| ||||||| ||| | |||| | | ||| || |||| || || || || | Sbjct 709 CTCCACA-GGGAGCGAGTCGCGCACGAACTCGTGCTCGATCACCACCGCGTCGCGCACAA 651 Query 127464 TGGCGTGAATAGTGTCCACCC-CAGGTCTATT-----GCGTAAAGT-CTTGAAGAGTTCC 127516 | |||| | | | || ||| | | || || | ||| | ||| | | Sbjct 650 TCTCGTGCACGCGGCTCTCCGGCAGCT-TGTTCACCAGCTTGGAGTACATGAGG-----C 597 Query 127517 ACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGA 127576 || || || || ||| | ||||||||||||| ||| || || |||||||||| ||| Sbjct 596 AC-GCGAAGTCCGTGTGCATACCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGG 538 Query 127577 CCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAG 127636 || |||||||| || |||||||| | |||||| || | || || ||||| |||||||| Sbjct 537 CCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAA 478 Query 127637 ATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGAC-TTTGTATC 127695 || |||||||| |||||||| | |||||||| | | || || || | || Sbjct 477 ATGCCCTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTACGA-CGACACACGCGGGTC 419 Query 127696 AAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTC 127755 ||||||| | |||||| || || || |||| | || |||| |||| ||| || Sbjct 418 GCACCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACGCACGGGATCGTCTCGATGGCGCG 359 Query 127756 AAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGT 127815 | || | | ||| || | || ||||||||| |||| ||||| || || Sbjct 358 CAGCAGGTGGTCCTTCTCCACGGCGTCCTTGATGTACGTATCAATGAGCAGCGAGTACAC 299 Query 127816 TTCGCCGTGGACCATTTCATTATGGC--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTT 127873 ||| |||||| ||| ||||| ||| | ||||||| |||| | ||| Sbjct 298 CTCGGCGTGGA--TGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGGACCTCGGGC 241 Query 127874 ATCTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCA 127933 | ||| || |||| | || || | | ||||| ||||| || ||| | || Sbjct 240 ACCTGCACTTCATTGCTGAAGTTCATGGCCAGGTTCTCGTTCACAATACCGTCGCTCGCA 181 Query 127934 GCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAG 127993 || || |||||||| | | ||| ||||| | | || || || ||||| || |||| Sbjct 180 GCGAAGAACGCCAGCACGTGCTTGATGAAGAACCGCTCGTTGTCCGTCAGGTTCGCCCAG 121 Query 127994 TCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 || | ||| || | || || | |||||| || ||||| Sbjct 120 TCCTTGAGGTCGTGCACCAGGTCCAGCTCCTCGGCCGTCCA 80 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613462897111320