Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq476 181 2e-40 seq4292 168 1e-36 seq4320 102 1e-16 >seq476 Length=26050 Score = 181 bits (200), Expect = 2e-40 Identities = 415/614 (68%), Gaps = 23/614 (4%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCT---CAGATAGTACAT 203895 ||||||||| ||||||| ||||||| |||| | || || || |||||||| Sbjct 4861 CTTGTCCACAGTGAACTTGATGGCGT---CGGCTTTCGGGCGTCCGCGCATGTAGTACAT 4805 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||||||||| || ||||||| ||| |||| | |||||| || | || ||||| | | | Sbjct 4804 GCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGACGTGAGCTTGCTGATGGT 4745 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014 |||||||| ||||| ||||| || ||||| || ||| ||| |||| || || || | Sbjct 4744 CGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAATG-TAGGCACCGCGGTCGG 4686 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGG 204074 | | || | | | | ||||||| |||||||||||||||||| || || || Sbjct 4685 CCGACAAGTCCAGTACTGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTCTCCTTGA 4626 Query 204075 TGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCAT- 204132 ||| | || | | | ||| | ||| | |||||| |||| || | ||| || Sbjct 4625 CGTGATCGGGGATGGCCT-TCACCTTCTGCACGGAGCCGCCGTCGTTCAGGA-TCTGATT 4568 Query 204133 --CCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTG 204190 | |||| | ||| ||||||| | || |||||| || ||||| ||| Sbjct 4567 GCGCACGTCGGGT--GTCCAGATGCCCAGCTCAATGAGCTCCTTCATCAGGTACTTGTTC 4510 Query 204191 ATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCG 204250 | |||| || || |||| |||||| | ||| || ||| |||| ||| | || ||| Sbjct 4509 ACGATCGTGAACTCACCGGCCAGCACACGGCGGTTGTACATGTTGGACGTGTAGGGCTCG 4450 Query 204251 AACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGC 204310 | | |||||||||||| | ||||| || ||| |||||||||||||| |||| ||| Sbjct 4449 ATGGACTCGTTGTTGCCTAGGATCTGGGCCGTGGAAGCCGTGGGCATGGGGGCCACCAGC 4390 Query 204311 AGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATC 204370 || |||||||| | ||||| ||| || | ||| || | | ||||| | || Sbjct 4389 AGCGAGTTGCGAAGACCGTGTTTGACCACGTTCTCCTTGAGCGCCGCCCAGT--TCCAGA 4332 Query 204371 GCACTG-----GGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGC 204425 | | | || | |||||||||||||||||||| ||||| || | ||| | || Sbjct 4331 GACCCGAGGACGGGGTGACGCCCCACATGTCGAACTGGAAGATCCCCTTGCTGGCCGGCG 4272 Query 204426 TGCCCTTGTACGTC 204439 ||||| | ||||| Sbjct 4271 AGCCCTGGAACGTC 4258 >seq4292 Length=2137 Score = 168 bits (186), Expect = 1e-36 Identities = 414/622 (67%), Gaps = 17/622 (3%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| | || || ||||| | |||| ||||| Sbjct 868 CTTCTCGAAGAAGTTGGTCTTGCCCTGGAGAGAGATCATGTCCATCCAGTCGAACGGGTT 809 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 |||||||| ||| ||| || | || || | ||||| | ||| ||||| || || Sbjct 808 CTTCACGTTGTAGATCTTTGGCACACCCAGCGAGTACAGCAGACGGTCGGCCACGAACTC 749 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| ||||| || | |||| || || | |||| || ||||||| || Sbjct 748 GATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTCCACAGGGAGCGAGTCGCG 689 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAG-ACACGTTCGTACC 159887 || ||||| | ||| ||| | ||||| ||| |||||||| || | || || | | Sbjct 688 CACGAACTCGTGCTCGATCACCACCGCGTCGCGCACAATCT-CGTGCACGCGGCTCTCCG 630 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 | ||||| || | | | | ||| ||||||||| ||||| ||||| |||| Sbjct 629 GCAGCTTGTTCACCAGCTTGGAGT---ACATGAGGCACGCGAAGTCCGTGTGCATACCCT 573 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 |||| || ||| | |||||| || | | | ||||| ||||||| || ||| |||| Sbjct 572 CGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGA 513 Query 160008 GCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACGCC 160066 |||| || |||| ||| ||| | | | | || || || ||||||||||| || |||||| Sbjct 512 GCCAGAAGATGG-AGCAGAAGGAGCCCGAGAAGAAAATGCCCTCCACGGCGGCGAACGCC 454 Query 160067 ACGAGCCTCTC-----ACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATT 160121 | || | ||| || | | | || ||| || |||| | ||||| | Sbjct 453 AGCAGACGCTCCGGGTACGACGACACACGCGGGTCGCA-----CCACTTGAGCGCCCAGT 399 Query 160122 CAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCT 160181 || ||||| | |||||| || ||||| |||| | || ||||| |||| Sbjct 398 GCGCTTTCTTCTTCACGCACGGGATCGTCTCGATGGCGCGCAGCAGGTGGTCCTTCTCCA 339 Query 160182 TCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGA 160241 | |||||||| ||| |||| ||| |||||||| || ||||| | || |||| Sbjct 338 CGGCGTCCTTGATGTACGTATCAATGAGCAGCGAGTACACCTCGGCGTGGATGTTCTCGA 279 Query 160242 TGGCCATCTGAAAGTTGTAGAA 160263 |||| ||||| ||| |||||| Sbjct 278 TGGCGATCTGGAAGCCGTAGAA 257 >seq4320 Length=1636 Score = 102 bits (112), Expect = 1e-16 Identities = 252/379 (66%), Gaps = 19/379 (5%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 |||||| || |||||||||||||||| || || || ||||| | |||| ||||| Sbjct 1251 CTTCTCAAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATCCAGTCGAACGGGTT 1310 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 ||| |||| ||| ||| | | || || | ||||| | ||| ||||| || || Sbjct 1311 CTTGACGTTGTAGATCTTGGACACGCCCAGTGAGTACAGCAGGCGGTCCGCCACGAACTC 1370 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| ||||| || | |||| || || | ||| || || |||| || | Sbjct 1371 GATGTACTGGCACATGAGCGCCGAGTTCATGCCAATGAGCTCCACAGGCAGCGAATCGCA 1430 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACCC 159888 || ||||| | ||||||| | ||||| ||| ||| |||| || | |||| Sbjct 1431 CACGAACTCGTGCTCAATCACCACCGCGTCGCGCACGATCT-CGTG-CACG--------- 1479 Query 159889 CGGCTT--GCCCAAAATGTGGTC---CTT---AAACAGGAGGCACGCAAAGTCGCAGTGC 159940 |||||| | || ||| | | ||| ||| ||||||||| ||||| |||| Sbjct 1480 CGGCTTTCGGGCAGCTTGTTGACGAGCTTCGAGTACATGAGGCACGCGAAGTCCGTGTGC 1539 Query 159941 AGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGC 160000 | || ||||| || ||||| |||||| || | | | || || ||||||| || ||| Sbjct 1540 ATACCTTCGTCTCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAGGCCGCGC 1599 Query 160001 GGTTTGAGCCAAAAAATGG 160019 |||||||| || |||| Sbjct 1600 TTCTTGAGCCAGAAGATGG 1618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795097779855120