Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq745 176 5e-39 seq6 174 2e-38 seq45 143 3e-29 seq93 113 5e-20 >seq745 Length=17434 Score = 176 bits (194), Expect = 5e-39 Identities = 155/191 (81%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| |||||||| || || ||||| |||| |||||||||||||||||||| | Sbjct 12114 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 12055 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||||||||||||||| | ||| | || |||||||||| ||| |||| ||||| | | | Sbjct 12054 TCAAGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 11996 Query 46524 CCACCG-TGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 || | ||||| || ||||| |||| ||||||||| ||||||||||| || || ||| Sbjct 11995 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 11936 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 11935 AAGATCTGCAT 11925 >seq6 Length=256829 Score = 174 bits (192), Expect = 2e-38 Identities = 181/235 (77%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||| ||||| || | | ||||| |||||| |||| ||| |||||| ||||| ||||| Sbjct 246188 TTAGTTGCCACCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTA 246129 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||| || ||||| |||| || ||||||||||| ||||| |||| |||||||||||| Sbjct 246128 GTCGCTCAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTC 246069 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCG 46538 | ||| | || |||||||||| ||||||| ||| | ||| | | | || ||| || Sbjct 246068 AGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACG 246010 Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || | ||||||||| |||||||||||||| || || ||||| ||||| Sbjct 246009 GCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTTACGAAGATCTGCAT 245955 >seq45 Length=78880 Score = 143 bits (158), Expect = 3e-29 Identities = 181/245 (74%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 46351 TGTA-CTATATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTT 46409 |||| ||| ||| || || || | | ||| | |||||| || | || |||||| | Sbjct 57302 TGTAGCTAGTTTAGTTTCCGCCACGAAGACGAAGCACCAGGTGAAGAGTCGACTCCTTCT 57243 Query 46410 GGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGC 46469 |||| ||||||||| || ||||| |||| || ||||||||||| ||||| |||| | Sbjct 57242 GGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGAC 57183 Query 46470 GCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACC 46528 |||||||||| | ||| | || ||||||||| ||| |||| ||| | ||| | | | | Sbjct 57182 GCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCA-CGTTGTCGATC 57124 Query 46529 GTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATT 46588 | ||| || ||||| |||| |||||| || ||||| |||||||| || || ||||| Sbjct 57123 GAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATC 57064 Query 46589 TGCAT 46593 ||||| Sbjct 57063 TGCAT 57059 Score = 136 bits (150), Expect = 4e-27 Identities = 160/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| || | || |||||| ||||| ||||||||| | ||||| |||| || Sbjct 57040 CACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAACGTGCGGCCGTCCTC 56981 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||| ||||| |||| ||||||||||| | ||| | || ||||||||| Sbjct 56980 AAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTG 56921 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562 ||| |||| ||| | ||| | | | || ||| || ||||| |||| |||||| || | Sbjct 56920 GATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCT 56862 Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 |||| |||||||| || || ||||| ||||| || Sbjct 56861 TGCCGGTCAGCGTCTTCACGAAGATCTGCATCTT 56828 >seq93 Length=65012 Score = 113 bits (124), Expect = 5e-20 Identities = 86/102 (84%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||||| |||| || |||||||| ||||| |||||||| || || ||||| | Sbjct 59767 ACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCC 59708 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||| || ||||||||||||||||| |||| |||||||||||| Sbjct 59707 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 59666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565197582722040