Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq4292 289 3e-73 seq6 149 6e-31 seq45 129 6e-25 seq745 116 4e-21 seq93 104 2e-17 >seq4292 Length=2137 Score = 289 bits (320), Expect = 3e-73 Identities = 540/780 (69%), Gaps = 20/780 (3%) Strand=Plus/Minus Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGC 132780 ||||| | ||||||||||||||||||||| || ||||| | | || | || | | Sbjct 771 AGCAGACGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCCGAGTTCATGCCGATC 712 Query 132781 AGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGACCGCGTCGGTGAC 132839 || ||| || |||| ||| | ||| ||| ||||||| | ||||||||| || Sbjct 711 AGCTCCACAGGGAGCGAGTCGCGCACGAACTCGT-GCTCGATCACCACCGCGTCGCGCAC 653 Query 132840 GATTTCCCTAACGCGCGCCGCGCTC-GGCCG-TTG--CACCAAATGCTTGAA---CATCA 132892 || || ||||| || ||| ||| | ||| ||||| ||||| | ||| | Sbjct 652 AATCTCGTGCACGCG----GCTCTCCGGCAGCTTGTTCACCA---GCTTGGAGTACATGA 600 Query 132893 AGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCA 132952 ||| || ||||| |||| |||||||| | | || || ||||| ||| ||| Sbjct 599 GGCACGCGAAGTCCGTGTGCATACCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCA 540 Query 132953 AGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGA 133012 ||| |||||||||||||| || |||||||| || |||| | ||| |||||| |||| Sbjct 539 GGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGA 480 Query 133013 AGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGG 133072 | | |||||| ||||| ||||| |||| ||| ||||| | ||| | | || || Sbjct 479 AAATGCCCTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTACGACGACACAC-GCGGG 421 Query 133073 -CGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCG 133131 || ||| |||||||| | || || | || |||||||| ||||| ||||||||| Sbjct 420 TCGCACCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACGCACGGGATCGTCTCGATGGCG 361 Query 133132 TTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATAC 133191 || || || ||||| | | | | ||| || || ||||| ||| ||| Sbjct 360 CGCAGCAGGTGGTCCTTCTCCACGGCGTCCTTGATGTACGTATCAATGAGCAGCGAGTAC 301 Query 133192 ATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACC 133251 | || | ||| | |||||| |||||||| || |||||||| ||||| || ||||| | Sbjct 300 ACCTCGGCGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGGACCTCGGGC 241 Query 133252 ACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCG 133311 ||||||||||| | ||| | | |||| || ||||| || || |||||||| || Sbjct 240 ACCTGCACTTCATTGCTGAAGTTCATGGCCAGGTTCTCGTTCACAATACCGTCGCTCGCA 181 Query 133312 GCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAG 133371 ||||| || |||||||||||||||||||| ||||||||||| ||| | | ||||| Sbjct 180 GCGAAGAACGCCAGCACGTGCTTGATGAAGAACCGCTCGTTGTCCGTCAGGTTCGCCCAG 121 Query 133372 TCGCGCGTGTCCTTGGA-CAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTT 133430 || | | | | || | |||||||| ||||||| | ||||| ||||| ||||| || || Sbjct 120 TC-CTTGAGGTCGTGCACCAGGTCCAGCTCCTCGGCCGTCCAGAACGAGGCCTCCGCCTT 62 Query 133431 TTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTT 133490 |||||||| ||||| ||| | || || || || | ||| |||||| ||||| Sbjct 61 CTTGTACATCTGCCACACGTCGTGCTCCTGGATCGGGAACAGCACGAACCGGTTCGGGTT 2 >seq6 Length=256829 Score = 149 bits (164), Expect = 6e-31 Identities = 174/230 (76%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || |||||||| ||||| |||||||| |||||||| ||||||| ||| | | Sbjct 245955 ATGCAGATCTTCGTAAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 246014 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 ||| | | |||| | || | || || | ||||| ||||| || |||||| |||| Sbjct 246015 GACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGCAT-CCCGCCTGACC 246072 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| ||||| || |||| ||||| || | |||||||| Sbjct 246073 AGCAGCGCCTGATCTTCGCTGGCAAGCAGCTTGAAGACGGCCGCACGCTGAGCGACTACA 246132 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| ||||| | |||||||| ||||||||||| || | || ||| Sbjct 246133 ACATCCAGAAGGAGTCTACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 246182 >seq45 Length=78880 Score = 129 bits (142), Expect = 6e-25 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| || ||||| | ||||| ||| | | Sbjct 57059 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 57118 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 ||| | | |||| | || | ||||||| ||||| ||||| || |||||| |||| Sbjct 57119 GACTCGATCGACAACG-TGAAGCAGAAAATCCAAGACAAGGAGGGCAT-CCCGCCTGACC 57176 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| ||||| || |||| ||||| || | |||||||| Sbjct 57177 AGCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACGCTGAGCGACTACA 57236 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| |||| || || ||||||| ||| | | ||||| Sbjct 57237 ACATCCAGAAGGAGTCGACTCTTCACCTGGTGCTTCGTCTTCGTGGCGG 57285 Score = 122 bits (134), Expect = 9e-23 Identities = 170/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || ||||| || ||||| || ||||| | ||||| ||| | Sbjct 56828 AAGATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCG 56887 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-G 38358 | ||| | | |||| | || | ||||||| ||||| ||||| || |||||| | Sbjct 56888 TCGGACTCGATCGACAACG-TGAAGCAGAAAATCCAAGACAAGGAGGGCAT-CCCGCCTG 56945 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||||| || || | ||| ||||| ||||| || |||| ||||| | | ||||| Sbjct 56946 ACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACGTTGAGCGACT 57005 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||| ||||| |||| || || ||||||| || || | || ||| Sbjct 57006 ACAACATCCAGAAGGAGTCGACCCTTCACCTGGTGCTTCGCCTGCGTGGTGGC 57058 >seq745 Length=17434 Score = 116 bits (128), Expect = 4e-21 Identities = 142/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| |||||||| | ||||| ||| | || Sbjct 11925 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 11984 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||||| | | | | || | ||||||| ||||| ||||| || |||||| ||||| Sbjct 11985 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCAT-CCCGCCTGACCA 12043 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||| ||||| ||||| || |||| ||||| ||| |||||||| Sbjct 12044 GCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAA 12103 Query 38423 CATCCAAAAGG 38433 |||||| |||| Sbjct 12104 CATCCAGAAGG 12114 >seq93 Length=65012 Score = 104 bits (114), Expect = 2e-17 Identities = 100/126 (79%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 ||||| ||| | ||||| ||||| || || | ||| ||||| |||||||| |||| ||| Sbjct 59654 GGAATCCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 59713 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAG 38464 || ||| |||||||||||||| ||||| ||| |||||||| ||||||||||| || | Sbjct 59714 ACGCTCTCGGACTACAACATCCAGAAGGAGAGC-ACGCTGCACCTGGTGCTGCGTCTGCG 59772 Query 38465 AGGCGG 38470 || || Sbjct 59773 TGGTGG 59778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500136681271680