Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq758 122 7e-22 seq342 89.7 4e-12 >seq758 Length=17183 Score = 122 bits (134), Expect = 7e-22 Identities = 218/318 (69%), Gaps = 3/318 (1%) Strand=Plus/Plus Query 518014 TACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTAC 518073 |||||||||||||||||| ||||| || |||| | ||||| || | ||| || | || Sbjct 5521 TACAAGACGATTATCAAAGTCTTCGCCACCCAGATGAGTATCGCCCGCCGTCGCCTTCAC 5580 Query 518074 TTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATC 518133 | ||| | || ||||||| | | || | |||||| || || || |||| ||| Sbjct 5581 CTCGAAGATGCCTTCTTCAATCGTAAGCAGCGAGACATCAAACGTCCCGCCTCCCAGATC 5640 Query 518134 AAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGC 518193 ||| || || || || || | | || || || || || ||||||| ||||| Sbjct 5641 AAAGATCAGCACGTTGTGCTCACCGCC---CTTCTTGTCCAGCCCGTACGCAATGGCAGC 5697 Query 518194 AGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTT 518253 ||| || || ||||| || || | || || || || ||||| || || || || || Sbjct 5698 AGCGGTCGGCTCATTGATGATACGCAGCACGTTCAGCCCAGCGATAGCCCCGGCGTCCTT 5757 Query 518254 AGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTAC 518313 |||||||| | || |||||||| ||||| || || || || | ||||||| | || Sbjct 5758 CGTGGCTTGGCGCTGCGAATCGTTGAAATACGCTGGGACCGTCACCACGGCATTCTTCAC 5817 Query 518314 TTCTTTACCAATATAAGC 518331 || ||||| || ||||| Sbjct 5818 TTGCTTACCGATGTAAGC 5835 >seq342 Length=33373 Score = 89.7 bits (98), Expect = 4e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 668855 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACGT 668914 ||||| |||||||||||| | || || ||||||| || |||||||| | || || ||| Sbjct 22535 GGTAAGGAAGGTCGTATTCGTGGTAACCTGATGGGTAAGCGTGTCGACTTTTCGGCCCGT 22594 Query 668915 ACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTC 668966 ||||| ||||| |||||||||| |||||| | | |||| || || |||| Sbjct 22595 ACAGTCATTACGGCTGATCCCAACATTGCTATTGACCAAGTCGGCGTCCCTC 22646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780535726230562