Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq4292 107 2e-18 >seq4292 Length=2137 Score = 107 bits (118), Expect = 2e-18 Identities = 187/270 (69%), Gaps = 8/270 (3%) Strand=Plus/Plus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 102107 ||||| || | ||| || ||||| | | |||||| | || || | |||||| | Sbjct 311 CTCATTGATACGTACATCAAGGACGCCGTGGAGAAGGACCACCTGCTGCGCGCCATCGAG 370 Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAA---G 102164 || | || || | | ||||||||| | ||||| | ||||||| || | | Sbjct 371 ACGATCCCGTGCGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGTGTG 430 Query 102165 TCG-CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 102223 ||| ||| || | ||||| || | || || || || ||||| || |||||||| Sbjct 431 TCGTCGTACC----CGGAGCGTCTGCTGGCGTTCGCCGCCGTGGAGGGCATTTTCTTCTC 486 Query 102224 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 102283 || ||||||||| | || | |||||||||||||| || |||||||| || || |||| Sbjct 487 GGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTT 546 Query 102284 CTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 ||| |||||||| ||| ||||||||||| Sbjct 547 CTCGAACGAGCTGATCAGCCGTGACGAGGG 576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620697574639440