Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq476 188 8e-43 seq529 109 6e-19 seq4292 96.9 4e-15 seq457 82.4 9e-11 >seq476 Length=26050 Score = 188 bits (208), Expect = 8e-43 Identities = 1043/1647 (63%), Gaps = 44/1647 (3%) Strand=Plus/Minus Query 109414 TAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTG 109473 || ||||| || || ||||| || |||||| ||||| | ||||| || | ||| ||| Sbjct 4812 TAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGACGTGAGCTTG 4753 Query 109474 GAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGACCA 109533 | ||||| | || | ||| | ||||||| ||| ||| | ||| Sbjct 4752 CTGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAATGTAGGCACCG 4693 Query 109534 CGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAA 109593 || || |||| || ||| | | ||| || | || ||||| || ||||||||| Sbjct 4692 CGGTCGGCCGACAAGTCCAGTACTGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTC 4633 Query 109594 TTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTCACCATG 109653 | ||||| | |||||| ||| || | || || | ||||| || | |||| || Sbjct 4632 TCCTTGACGTGATCGGGGATGGCCTTCACCTTCTGCACGGAGCCGCCGTCGTTCAGGATC 4573 Query 109654 AGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTG 109713 ||| || || | ||||| || | || |||| || | | || | |||| Sbjct 4572 TGATTGCGCACGTCGGGTGTCCAGATGCCCAGCTCAATGAGCTCCTTCATCAGGTACTTG 4513 Query 109714 TTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGT 109773 || || | || ||||| || || || ||| ||| ||||| | ||||||||| Sbjct 4512 TTCACGATCGTGAACTCACCGGCCAGCACACGGCGGTTGTACATGTTGGACGTGTAGGGC 4453 Query 109774 TCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATG 109833 |||| |||| |||||||||||||| || || |||||||| ||||||||||| |||| Sbjct 4452 TCGATGGACTCGTTGTTGCCTAGGATCTGGGCCGTGGAAGCCGTGGGCATGGGGGCCACC 4393 Query 109834 AGAAGACTGTTTCGGAGACCCTTCGTCTTTACC-CGCTCACGCATTGCGTC--CCAATCA 109890 || || ||| || ||||| | || || ||| || || | ||| | ||| | Sbjct 4392 AGCAGCGAGTTGCGAAGACCGT--GT-TTGACCACGTTCTCCTTGAGCGCCGCCCAGTTC 4336 Query 109891 TAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCA 109950 | |||| | || | || |||||| || || | | |||| Sbjct 4335 CAGAGACCCGAGGACGGGGTGACGCC---CCACATGTCGAACTGGAAGATCCCCTTGCTG 4279 Query 109951 GCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCC 110010 || || || |||| ||| ||||||| | || ||| ||| | ||| || | | Sbjct 4278 GCCGGCGAGCCCTGGAACGTCTCGTAGGGGCCGAGCTCCTTGGCAATCTCCATGGACGTC 4219 Query 110011 TCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAG---GCGAGACTCT 110067 || | || || | || || ||||| || || | || |||| ||| | || Sbjct 4218 TCGACGGCGGCGTAGTAGATCGTCTCGAAGATGTTC---TTGTTGAGCTCGCGGGCCTGC 4162 Query 110068 TCACAGTCGAAGG-GAAGACCACAAAGAATAAACACATCCGCTAGACCCTGAACACCGAG 110126 || | ||||| | | || || | || | || | ||||| || ||||| || |||| Sbjct 4161 TCGCTCTCGAACGCGTAGTTCATGAGGA-TGAAGGCGTCCGCGAGGCCCTGGACGCCGAT 4103 Query 110127 ACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCG 110186 || |||||||| || |||||| || || || | |||||||| ||||| Sbjct 4102 GCCGATGGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCGGCCACGGGGTAGTAGTTGAC 4043 Query 110187 GTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTA 110246 |||||||||| ||||| || ||||| ||| |||| || | |||||| | ||| Sbjct 4042 GTCGATGACCTTGTTGAGGTTGCGGGTCACCACCTTGGTGACCTCGTAGAGTTTCTGGTA 3983 Query 110247 ATCGAACGTTTTCGTC-TCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGC 110305 |||||| |||| ||| || | ||||| || || | || || || |||| Sbjct 3982 GTCGAACACGC-CGTCGTCC------ACGAACTTGGGCAGCGCCACGGAGGCCAGGTTGC 3930 Query 110306 ACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTG---GAAC 110362 |||| | |||||| | ||||| |||| | || |||| |||| || | Sbjct 3929 ACACGGCCACCTCGTCGGGGGACGTGTACTCCATCACCTCGCAGCACAGGTTGCTGGAGC 3870 Query 110363 TCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCA 110422 | || || | ||||| ||| || || ||| |||| || ||||| ||||||| Sbjct 3869 GGATGGTG---CCGAGGTTCTGCTGGTTGGACTTGCGGTTGGCCGCGTCCTTGTAGAGCA 3813 Query 110423 TGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGG 110482 || | || || || || |||| | | || ||||| ||| || | || ||| Sbjct 3812 TGAAGGGCACGCCCGTCTCGATCTGCGCGTCCAGGATGGCGAACCA--CAGCTGCTGCGC 3755 Query 110483 G--GACAGT--TGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAAT 110538 | || || |||| ||| | || || |||||||||| ||| | | |||||| Sbjct 3754 GTTGATGGTCTTGCGG--GCGCGGCCCTCGCGCTCGTACTTGTCGTAGAGGCTCTCAAAC 3697 Query 110539 TCCTGTCCGTA-CACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATT 110597 || | || | ||| || | || || |||| || ||| ||||| | ||| || Sbjct 3696 TCGTCCCCCCAGCAC-TCGTAGAGCCCGGGGGCCTCGTTGGGGCAGAACAAACTCCACTT 3638 Query 110598 TCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTC 110657 || |||| || | ||||||||||||||| || | ||||| ||| |||| ||||| Sbjct 3637 GCCGTTGGCCTCCACGCGCTTCATGAACAGGTCGGGCACCCACAGCGCGTAGAACAGGTC 3578 Query 110658 ACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATC 110717 ||| ||| | || | || ||||| ||| || |||| || || | | || Sbjct 3577 GCGGGCACGGTGCAGCTCGTTGCCGTGGTTCTTGCGCAGGTCCAGGAACTCGAACACGTC 3518 Query 110718 CGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGACGACC--CGCC-TGGTT 110774 | |||||| || ||||| |||| |||| | ||||| || || |||| |||| Sbjct 3517 GGCGTGCCAGGGCTCGAGGTAGATGGCGAAGCTGCCCTTGCGCTTGCCGCCGCCCTGGTC 3458 Query 110775 AACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACC 110834 || || || || ||| | ||||| || | ||||| || || || || | ||| || Sbjct 3457 CACGTACCGGGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATGCCGTTGGAGGAGCC 3398 Query 110835 ATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACC 110894 || || || | ||| | || |||||||||||| ||| || || || ||||| Sbjct 3397 GTTGGTGCCGCGAATGTAGCTGTTGGTGGCACGAATGTTGTGCATGCTGATGCCGATACC 3338 Query 110895 ACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGA 110954 ||||||||||| || || |||| |||| || |||| ||||| || || || Sbjct 3337 CCCCGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGATACCCTCGATGGA 3278 Query 110955 ATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATT 111014 || ||| |||| | ||| ||||| || |||| ||| ||||| |||||||| || || Sbjct 3277 GTCGTCCTGCATGGCCAATAGGAAGCAGGAGGACAGCTGCGGACGCGGCGTTCCGGCGTT 3218 Query 111015 GAAGAGTGTAGGTGTCGCATGAATGAA 111041 || || || || ||||| || |||| Sbjct 3217 AAACAGCGTCGGCGTCGCGTGCGTGAA 3191 >seq529 Length=24160 Score = 109 bits (120), Expect = 6e-19 Identities = 338/514 (66%), Gaps = 23/514 (4%) Strand=Plus/Plus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| || ||||| ||||| || || || | || | |||||||| || | ||||| Sbjct 19867 ATCTGCCGGTCGAATCGACCGGGACGCAGGATGGCCTTGTCAAGAATGTCCGCGCGGTTC 19926 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAGA 11613 ||| | || | || || | || ||| | || ||||| ||||| || || Sbjct 19927 GTACCAGCCAGCACCACCACACCT---TCACTCGAGTTAAAACCATCCATCTCGACCAGC 19983 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTG------GAGGGCATACCACCTGC--CG 11665 | |||||| | ||| | ||||||||| |||||| || |||| | ||| || Sbjct 19984 AACTGGTTAAGCGTGTTTTCACGCTCGTCGTTGCCTCCCGAAAAGTTACC-CTTGCTACG 20042 Query 11666 AACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCAC 11725 | ||| | || || || || || || ||||| ||||| ||||| ||| || | Sbjct 20043 AGCGCGGG----CCACGGCATCGATTTCGTCAATGAACACGATGCACGGGGCGTTCGCGC 20098 Query 11726 GTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGA 11785 | |||| | ||| | ||||| ||||| || || ||||| ||||||||||| | || Sbjct 20099 GCGCCTCCTTGAACAAGTCACGCACACGGGACGGACCCACACCGACGAACATCTCGATGA 20158 Query 11786 AGTTTGCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCG 11844 | | | | || | ||||| ||| || || | | ||||||||| |||| || Sbjct 20159 AATCCGAACCGGAGATGCTGAA-GAAAGGCACGCTGGCCTCACCAGCCGTGGCCTTCGCC 20217 Query 11845 AGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCA 11904 || ||||||||||||||||| || | || | || || || || ||||||||| ||| Sbjct 20218 AGCAGAGTCTTACCCGTACCGGGCGGGCCGACAAGCAGAGCACCCTTGGGGATCTTCGCA 20277 Query 11905 CC-ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTC 11963 || | ||| | | |||| | || ||||||||||||| |||| | |||| Sbjct 20278 CCGAGCTCC-GTGAACCGCTTCTGGTTGCGAAGGAAGTCCACAAACTCCATGATCTCCTT 20336 Query 11964 CTTGGCGGAGTCGATACCCTCAACATCGGTGAAA 11997 |||||| ||| | ||| | ||||| ||||| Sbjct 20337 CTTGGCCTCGTCCACACCAGCCACATCCTTGAAA 20370 >seq4292 Length=2137 Score = 96.9 bits (106), Expect = 4e-15 Identities = 373/578 (65%), Gaps = 15/578 (3%) Strand=Plus/Minus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 || || ||||| | ||| |||||||| || ||||| || | ||| ||||| | ||||| Sbjct 882 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGAGAGATCATGTCCATC 823 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGATTGGTGGTTGACCAACTTGTTTCAGAAGACGA 119327 |||| || || || || ||| |||| ||| ||| | | ||| ||||| Sbjct 822 CAGTCGAACGGGTTCTTCACGTTGTAGATCTTTGGCACACCCAGCGAGTACAGCAGACGG 763 Query 119328 TCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACAC 119387 |||| || ||||||| || | | |||| |||| ||||| || || || | ||| Sbjct 762 TCGGCCACGAACTCGATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTC-CAC 704 Query 119388 -GGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGTG 119446 ||||| | ||| | | ||| | | ||||||| |||| || || ||| || ||| Sbjct 703 AGGGAGCGAGTCGCGCACGAACTCGTGCTCGATCACCACCGCGTCGCGCACAATCTCGTG 644 Query 119447 AATA-GTTTCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACAACTCTACG---GCAAATT 119502 | | ||| || | ||||| || || || | || | | || || | Sbjct 643 CACGCGGCTCTC-CGGCAGCTTGTT---CACCAGCTTGGAGTACATGAGGCACGCGAAGT 588 Query 119503 CTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGA 119562 | || | || || || || ||| ||||| || ||||| || |||||||||| Sbjct 587 CCGTGTGCATACCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATGA 528 Query 119563 GTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCA 119622 | || | ||||| ||||| ||||||| || || || || ||||| |||||||||| Sbjct 527 GGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAAATGCCCTCCA 468 Query 119623 CACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGA----CTTGTCGAACCACTTG 119678 | |||||| || | |||||||| | | | ||| | | |||| |||||||| Sbjct 467 CGGCGGCGAACGCCAGCAGACGCTCCG-GGTACGACGACACACGCGGGTCGCACCACTTG 409 Query 119679 AGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGC 119738 || ||||||| || || || | ||| |||| || | |||||| | || || Sbjct 408 AGCGCCCAGTGCGCTTTCTTCTTCACGCACGGGATCGTCTCGATGGCGCGCAGCAGGTGG 349 Query 119739 TTCTTTTCAGCACCATCCTTAATATATTTATCAATGAG 119776 | ||| || | | ||||| || || |||||||||| Sbjct 348 TCCTTCTCCACGGCGTCCTTGATGTACGTATCAATGAG 311 >seq457 Length=26735 Score = 82.4 bits (90), Expect = 9e-11 Identities = 117/163 (72%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 168430 TTACCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGACA 168489 ||||| || | || || || ||||| | ||||| || ||||| | ||||| | ||| Sbjct 16111 TTACCGCGCAACGGGAAGACGCCATAGTAGTCTCTGCCAACGACAGCAAGACCTCCCACA 16170 Query 168490 GCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACACTTTCCAGACTGT--G 168547 |||| ||| || || ||||| || || || | ||| || || || | || || | | Sbjct 16171 GCGACAGTCTTGGCGGAATCTCCTTCCGTGAGGATCAGGGTGCAGT--CCTTGCTCTTCG 16228 Query 168548 CCGTACCAGCTTTGTTCGCATCGTCCAATTTGGGGATACCAGT 168590 |||| ||||| | |||||||||||||| |||||||| || || Sbjct 16229 CCGTGCCAGCGTGGTTCGCATCGTCCAGCTTGGGGATGCCCGT 16271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588933468570600