Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq476 192 7e-44 seq4292 122 1e-22 seq1778 86.0 7e-12 >seq476 Length=26050 Score = 192 bits (212), Expect = 7e-44 Identities = 1099/1731 (63%), Gaps = 50/1731 (3%) Strand=Plus/Minus Query 105596 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTTG 105655 |||||||| ||||||||||| || | ||||| ||||| | ||||| || | ||||||| Sbjct 4812 TAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGACGTGAGCTTG 4753 Query 105656 GACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAGCGACCA 105715 || || || | ||| | || | ||||||||| |||| || ||| Sbjct 4752 CTGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAATGTAGGCACCG 4693 Query 105716 CGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTCCCACACTGTGCGGTAGAGA 105775 || | |||| || || | || ||||| |||||| |||||||| || ||| Sbjct 4692 CGGTCGGCCGACAAGTCCAGTACTGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTC 4633 Query 105776 TTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCTTGACCATG 105835 | ||||| | ||| ||||| | | || || | || || || | || | || Sbjct 4632 TCCTTGACGTGATCGGGGATGGCCTTCACCTTCTGCACGGAGCCGCCGTCGTTCAGGATC 4573 Query 105836 AGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTG 105895 ||| || || | ||| | || | || |||| || || | || | |||| Sbjct 4572 TGATTGCGCACGTCGGGTGTCCAGATGCCCAGCTCAATGAGCTCCTTCATCAGGTACTTG 4513 Query 105896 TTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGT 105955 || || ||| ||||| || || || | | || ||||| | ||||||||| Sbjct 4512 TTCACGATCGTGAACTCACCGGCCAGCACACGGCGGTTGTACATGTTGGACGTGTAGGGC 4453 Query 105956 TCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATC 106015 || | | | || || || || | ||| || || ||||| || || ||||| || |||| | Sbjct 4452 TCGATGGACTCGTTGTTGCCTAGGATCTGGGCCGTGGAAGCCGTGGGCATGGGGGCCACC 4393 Query 106016 AAAAGACTGTTACGAAGACCCTTTTCCTTGATG-CGTTC--CTTGAGAACATCCCAGTCG 106072 | || ||| |||||||| | || ||| ||||| |||||| | |||||| Sbjct 4392 AGCAGCGAGTTGCGAAGACCGTGTT---TGACCACGTTCTCCTTGAGCGCCGCCCAGTTC 4336 Query 106073 TAGTT----GAGCTTGGTTTCACCTTCCCACATATCAAATTG-AAGCACCCCTTG--GGA 106125 || ||| || | || ||||||| || || || ||| ||||||| || Sbjct 4335 CAGAGACCCGAGGACGGGGTGACGC-CCCACATGTCGAACTGGAAGATCCCCTTGCTGGC 4277 Query 106126 CGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCA-GCCAATTCACA-GCTC 106183 || | || |||| || ||||| |||| || | ||| | | |||| || | | Sbjct 4276 CG---GCGAGCCCTGGAACGTCTCGTAGGGGCC--GAGCTCCTTGGCAATCTCCATGGAC 4222 Query 106184 GCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCA 106243 | ||| | || |||| || || || || ||||| || | ||| ||| | Sbjct 4221 GTCTCGACGGCGGCGTAGTAGATCGTCTCGAAGATGTTCTTGTTGAGCTCGCGGGCCTGC 4162 Query 106244 TCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAA 106303 || || || |||||| | || || | |||||||| || || || || | Sbjct 4161 TCGCTCTCGAACGCGTAGTTCATGAGGATGAAGGCGTCCGCGAGGCCCTGGACGCCGATG 4102 Query 106304 CCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTG 106363 || || || | ||| ||||| || ||||| ||||| | ||||| || | || | Sbjct 4101 CCGATGGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCGGCCACGGGGTAGTAGTTGACG 4042 Query 106364 TCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAA 106423 || ||||| ||| || || ||| || | ||| |||| || | ||||| | || Sbjct 4041 TCGATGACCTTGTTGAGGTTGCGGGTCACCACCTTGGTGACCTCGTAGAGTTTCTGGTAG 3982 Query 106424 TCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAA 106483 || || || | || | || |||| || || || | || |||| ||||| Sbjct 3981 TCGAACACGC------CGTCGTCCACGAACTTGGGCAGCGCCACGGAGGCCAGGTTGCAC 3928 Query 106484 ACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTG---GAACTC 106540 || ||| ||| || |||||||| | | || |||| |||| || | Sbjct 3927 ACGGCCACCTCGTCGGGGGACGTGTACTCCATCACCTCGCAGCACAGGTTGCTGGAGCGG 3868 Query 106541 TTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATG 106600 || || || | |||| ||||| ||| |||| ||| ||||||||||||||| Sbjct 3867 ---ATGGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGGCCGCGTCCTTGTAGAGCATG 3811 Query 106601 TAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACAT-CGGCG-GCTG 106658 ||||| |||||||| |||| | | || || || ||||| | | ||| | || Sbjct 3810 AAGGGCACGCCCGTCTCGATCTGCGCGTCCAGGATGGCGAACCACAGCTGCTGCGCGTTG 3751 Query 106659 GTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCT 106718 | | ||| ||| || ||||| ||||||||| ||||||| |||||||| | Sbjct 3750 ATGGTCTTGCG--GGCGCGGCCCTCGCGCTCGTACTTGTCGTAGAGGCTCTCAAACTCGT 3693 Query 106719 CACCCACCGCG-TCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCA 106777 | ||| | || ||| |||| || || |||| || || ||||| | | ||| | || Sbjct 3692 CCCCC-CAGCACTCGTAGAGCCCGGGGGCCTCGTTGGGGCAGAACAAACTCCACTTGCCG 3634 Query 106778 CCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC-T 106836 |||| || ||||||||||| ||||| || | |||||| | | || || || | Sbjct 3633 TTGGCCTCCACGCGCTTCATGAACAGGTCGGGCACCCACAGCGCGTAGAACAGGTCGCGG 3574 Query 106837 ACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGC 106896 ||| | || | |||| || ||||| || | || |||||||| | | || || Sbjct 3573 GCACGGTGCAGC-TCGTTGCCGTGGTTCTTGCGCAGGTCCAGGAACTCGAACACGTCGGC 3515 Query 106897 GTGCCATGGCTCAAGATAGACTGCGATAGAT-CCCTTTCG---ACGCCCAGCTTGATTTA 106952 |||||| ||||| || |||| |||| || | ||||| || | || | || | | Sbjct 3514 GTGCCAGGGCTCGAGGTAGATGGCGA-AGCTGCCCTTGCGCTTGCCGCCGCCCTGGTCCA 3456 Query 106953 CATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCAT 107012 | || || || ||| |||| || ||||| ||||| || || || || | || || | Sbjct 3455 CGTACCGGGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATGCCGTTGGAGGAGCCGT 3396 Query 107013 TTGTCCCCCGAATACGAGAT-TTATTGGCTCTCACATCATGGATGTGCATCCCAATACCC 107071 | || || ||||| || | || |||| | | | || ||| || || |||||| Sbjct 3395 TGGTGCCGCGAAT-GTAGCTGTTGGTGGCACGAATGTTGTGCATGCTGATGCCGATACCC 3337 Query 107072 CCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAG 107131 || |||||||| ||||| || |||| | | || || |||||||||| | ||| ||| Sbjct 3336 CCCGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGATACCCTCGATGGAG 3277 Query 107132 TCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTG 107191 || |||| |||| | |||||||| ||||| |||||| | || || || || || Sbjct 3276 TCGTCCTGCATGGCCAATAGGAAGCAGGAGGACAGCTGCGGACGCGGCGTTCCGGCGTTA 3217 Query 107192 AAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAA 107250 || || || || || ||||| |||| | || | || ||||| ||||| ||||||| Sbjct 3216 AACAGCGTCGGCGTCGCGTGCGTGAAGA-ACTTCTGCGACATGAGCTCGTACGTCTCCAG 3158 Query 107251 GACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACAT 107301 | | | ||||| || ||||||||| | ||||| ||||||| ||| Sbjct 3157 CGCGGCCTGGATGTCGGCCTTGTGGATGCCCAGCGCCACGCGCATAATCAT 3107 >seq4292 Length=2137 Score = 122 bits (134), Expect = 1e-22 Identities = 336/503 (67%), Gaps = 14/503 (3%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 882 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGAGAGATCATGTCCATC 823 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGAGACG 117104 |||| || || |||||| |||| | || |||||| |||| | | | || ||||| Sbjct 822 CAGTCGAACGGGTTCTTCACGTTGTAGATCTTTGGCACACCCAGCGAG-TACAGCAGACG 764 Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGAT-TAC 117163 || | ||| |||| ||||||| | |||| | | |||||||| ||||| || | || Sbjct 763 GTCGGCCACGAACTCGATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTCCAC 704 Query 117164 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 117223 | ||||| | ||| | |||| | | ||| ||| | ||||| || ||| || ||| Sbjct 703 A-GGGAGCGAGTCGCGCACGAACTCGTGCTCGATCACCACCGCGTCGCGCACAATCTCGT 645 Query 117224 GGA----TAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAAC 117279 | | | ||| || || | | || | | | ||| ||| || || Sbjct 644 GCACGCGGCTCTCCGGCAGCTTGTTCACCA-GCTTGGAGTACATGAG--GCAC-GCGAAG 589 Query 117280 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATG 117339 ||| ||| | |||||| || ||| || || || || ||||||| ||||| |||||| Sbjct 588 TCCGTGTGCATACCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATG 529 Query 117340 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 117399 || || |||||||| | ||| | || | |||||| || || |||||||| || |||||| Sbjct 528 AGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAAATGCCCTCC 469 Query 117400 ACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGAC-TTTGTGTCAAACCATTT 117458 || || ||||| | || ||||| | | | || ||| || | ||| |||| || Sbjct 468 ACGGCGGCGAACGCCAGCAGACGCTCCGGGTACGA-CGACACACGCGGGTCGCACCACTT 410 Query 117459 CATTGCCCATTTCGCCTTCTTCT 117481 | ||||| | ||| ||||||| Sbjct 409 GAGCGCCCAGTGCGCTTTCTTCT 387 >seq1778 Length=6196 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 356 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 415 Query 136224 CAGGTAGGAGCT 136235 | |||||||||| Sbjct 416 CCGGTAGGAGCT 427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589938196011480