Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1844 197 1e-45 seq4 107 2e-18 >seq1844 Length=5900 Score = 197 bits (218), Expect = 1e-45 Identities = 455/678 (67%), Gaps = 27/678 (4%) Strand=Plus/Plus Query 29791 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 29850 ||||| ||| ||||| || || |||| ||| || ||||| || ||||| | ||| Sbjct 1798 AGCTGCTTCTGGAGCGGCTCGACATGATTCAGATACACGTGGGCATCTCCAATAACGTGA 1857 Query 29851 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29910 ||||||||||| || | | || | || || || | || ||| || | | |||| Sbjct 1858 ACAAACTCTCCAGGCTTCAATCCAGCCACCTGCGCAACCAGTCGCGTAAGCAATGCGTAG 1917 Query 29911 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 29970 || ||||| || || || || || || |||||||| |||| | |||||| | ||| || Sbjct 1918 CTAGCGATATTGAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAG 1977 Query 29971 GAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATG 30030 || ||||| |||||| |||||| ||||| || | |||||||||| || || ||||| Sbjct 1978 GAAAGCTCGCCGTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCAT- 2036 Query 30031 AGGCCCA---AG-TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTT 30086 | || || || || ||||| || ||| | |||||| | ||| ||||| Sbjct 2037 ---CTCATTGAGATCCGCCGGATTCCACGCCGACAGCACGATGCGGCGGTCCGTCGGGTT 2093 Query 30087 GTTCCTGA---TGAGGT---CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTA 30140 | | | || || || | ||| ||||| ||||| ||| || | ||| Sbjct 2094 CGTGCGCAGCTTGTGGATAACCCCCGCG------AGCTGGTCCACGCCCTGGCCAGTGTA 2147 Query 30141 GTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGG 30200 || || |||||||||||||| || || ||||||| ||||||||| ||||| ||||| Sbjct 2148 ATCGGCATGCATGTCCGTGTACTTGGCGCCAAAATGCCGCCACTGGAAGCCGTAGACCGG 2207 Query 30201 TCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC-CTCTTGTCCAAAAAGTCTCTGGAAC 30259 ||| ||||| ||| | || | | || | ||||| | |||||| | | || | || Sbjct 2208 TCCGAGGTCGCCCACCTCTC-GCGCCTGCAGCCCTCGACTGTCCAGATACTCGCGCGACG 2266 Query 30260 CGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTC 30319 | ||| |||||||||| | | |||||| ||| | | | | ||| || | Sbjct 2267 CATTGCCGTCCCAGATGTGGATGTCCTTCTGCTGCAGCGAGTGCGCGCTGGTGTCGCCGC 2326 Query 30320 TGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGA 30379 ||| |||||||||||||||||| | ||| | ||| || || | |||||||||||| | Sbjct 2327 TGATGAACCACAGCAGCTCCTCGGCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCA 2386 Query 30380 GGGGAAAC----TGTCCCTTGAGGCCGTACATGGCCTGAGAACCAAACACGGACAAGACT 30435 | || ||| |||||| |||||| | || ||| | || || || |||| Sbjct 2387 GCGGGAACACGTTGTCCC-TGAGGCTGAACCGCATCTGCGCGCCGAAGACCGACAGCGTG 2445 Query 30436 CCCGTGCCCGTCCTGTCT 30453 ||||| ||||| | |||| Sbjct 2446 CCCGTCCCCGTGCGGTCT 2463 >seq4 Length=136950 Score = 107 bits (118), Expect = 2e-18 Identities = 206/304 (68%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 48331 CCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTCAC 48390 |||||||| | || || ||||| | ||||||| | |||||| || | | ||| | Sbjct 14539 CCACCTCCTGCACCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTCCC 14598 Query 48391 CCCTCTCGACCCGAAAGGGGTTGCACCCAAAGTTAAACAGTATGACGCCGAGGTTGCCCC 48450 | | || || | ||| | | | | ||| ||||| || ||||| | |||||| | Sbjct 14599 CGCGCTGCACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCCGC 14658 Query 48451 TGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTTCAGGGCCAGGCCGG 48510 |||||||| ||| | ||| || || || ||| || || || || || |||||||| | Sbjct 14659 GGTAGTCGGCGTCGATCACGCCCGCGCCCGTGTCGATGAACTTCTTGAGCGCCAGGCCAG 14718 Query 48511 ACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTCACGGCCAGGTCCGTCTTTA 48570 | | || ||||| | ||||| ||| | ||||| || ||||||||||||| | Sbjct 14719 AGCGCGGCGCCACGCGCGCGTAGCAGCCGGCGGGCACGGCGACCACCAGGTCCGTCTTGA 14778 Query 48571 CCAGGGCCCTGCCGAAGGAGGGGACCACGACCGGGTGAGCGGCCGCCAGGTCGTAACCCG 48630 | ||| || ||||| | ||||| |||| | || ||||||| |||||| |||| Sbjct 14779 CGAGGCCCTTGCCGCCCGCGGGGATCACGGCGTCGTAGGCGGCCGACAGGTCCAGGCCCG 14838 Query 48631 CGGC 48634 |||| Sbjct 14839 CGGC 14842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408588830384021