Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq476 452 7e-122 seq4292 244 2e-59 seq4320 168 1e-36 >seq476 Length=26050 Score = 452 bits (500), Expect = 7e-122 Identities = 1213/1833 (66%), Gaps = 75/1833 (4%) Strand=Plus/Minus Query 212595 TAGTACATGCCGGTCTTTAGGCCCTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTC 212654 ||||||||||||||||| || ||||| |||| ||| | |||||| | ||||| || Sbjct 4812 TAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGACGTGAGCTT- 4754 Query 212655 TTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGATGTAG--GTTCAGGGACTGACTCT 212712 ||| | | || |||| ||| ||||| | ||| || |||||||||| Sbjct 4753 ----GCTGA-TGGTCGGGTC--------GGC---GATGTGGATGTTGAGCGACTGACTCT 4710 Query 212713 GGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCC 212772 || ||| | | | | ||| || | || ||| | | | |||| || ||||| Sbjct 4709 GGCAAATGTAGGCACCGCGGTCGGCCGACAAGTCCAGTACTGCCTTCTGCTTGATCTCCC 4650 Query 212773 ACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACC 212832 |||| |||||| | | || |||| || || |||| | | | |||||||| || | Sbjct 4649 ACACCGTCTTGTACTTCTCCTTGACGTGATCGGGGATGGCCTTCACCTTCTGCACGGAGC 4590 Query 212833 CCCTGTGTATGGTCAG---CTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCA 212889 | | || | |||| ||| ||||| ||| |||||| |||| | || Sbjct 4589 CGCCGTC---GTTCAGGATCTGATTGCGCACGTCGGGTGTCCAGATGCCCA-GCTCAATG 4534 Query 212890 GGCAC-TTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGG 212948 || | || | ||||| ||| || ||| ||| ||||| | ||||| | | | | Sbjct 4533 AGCTCCTTCATCAGGTACTTGTTCACGATCGTGAACTCACCGGCCAGCACACGGCGGTTG 4474 Query 212949 TAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTG 213008 || | ||| || ||||||||||||||| ||||||||| || || ||||| || ||| Sbjct 4473 TACATGTTGGACGTGTAGGGCTCGATGGACTCGTTGTTGCCTAGGATCTGGGCCGTGGAA 4414 Query 213009 GCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGC 213068 || ||||||||||| |||||||| || ||| | | ||||| | | | | | | Sbjct 4413 GCCGTGGGCATGGGGGCCACCAGCAGCGAGTTGCGAAGACCGTGTTTGACCACGTTCTCC 4354 Query 213069 CGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCA 213128 ||| | ||||||| ||| || || || | || ||| ||||||||| Sbjct 4353 TTGAGCGCCGCCCAGTTCCAGAGACCCGA--GGACGGGGTG----ACGCCCCACATGTCG 4300 Query 213129 AACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCC 213188 ||||| ||||| || ||||| | || ||||||| | | ||||||||| ||||| Sbjct 4299 AACTGGAAGATCCCCTTGCTGGCCGGCGAGCCCTGGAACGTCTCGTAGGGGCCGAGCTCC 4240 Query 213189 TTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTG 213248 ||||| | ||| ||||| || | ||| ||||||||||| || || || || | | || Sbjct 4239 TTGGCAATCTCCATGGACGTCTCGACGGCGGCGTAGTAGATCGTCTCGAAGATGTTCTTG 4180 Query 213249 TTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCC 213308 ||||||| ||||| | | ||| | ||||| | ||| | || || Sbjct 4179 TTGAGCTCGCGGGCCTGCTCGCTCTCGAACGCGTAGTTCATGAGGATGAAGGCGTCCGCG 4120 Query 213309 AGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTC 213367 || |||||||| |||||||||||||| | ||| | || ||| |||||| | || ||| | Sbjct 4119 AGGCCCTGGACGCCGATGCCGATGGGGCGGTGGCGCATGTTGGACTTGCGCGC-CTCGGC 4061 Query 213368 CAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGAC 213427 || |||||| ||||| |||||||| |||||||||||||||||| |||| |||||||| Sbjct 4060 CACGGGGTAGTAGTTGACGTCGATGACCTTGTTGAGGTTGCGGGTCACCACCTTGGTGAC 4001 Query 213428 ATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGC 213487 | | || | || || | ||||||| ||||| | ||| |||| ||||| || Sbjct 4000 CTCGTAGAGTTTCTGGTAGTCGAACACG------CCGTCGTCCACGAACTTGGGCAGCGC 3947 Query 213488 GATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGT 213547 | | |||||||||||| ||||||||||| | | | ||||||||||| | |||| Sbjct 3946 CACGGAGGCCAGGTTGCACACGGCCACCTCGTCGGGGGACGTGTACTCCATCACCTCGCA 3887 Query 213548 GCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGA 213607 ||||||||||||| | ||||||||||| |||||||| ||||| ||||| |||||| | Sbjct 3886 GCACAGGTTGCTGGAGCGGATGGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGGCCGC 3827 Query 213608 ATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCA 213667 ||||||||||||||| |||| || ||||| | ||| | |||| || | ||| Sbjct 3826 GTCCTTGTAGAGCATGAAGGGCACGCCCGTCTCGATCTGCGCGTCCAGGATGGCGAACCA 3767 Query 213668 GAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGT 213726 || | | || |||| | || | | ||| | | || |||||||| |||| Sbjct 3766 CAGCTGCTGCGCGTTGA----TGGTCTTGCGGGCGCGGCCCTCGCGCTCGTACTTGTCGT 3711 Query 213727 AGA-GCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCC--CGGACAGGATGCGGGAC 213783 ||| |||| | || |||| |||||| | || || || || | | | ||| | Sbjct 3710 AGAGGCTC-TCAAACTCGTCCCCCCAGCACTCGTAGAGCCCGGGGGCCTCGTT--GGGGC 3654 Query 213784 ACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACA 213843 | | | ||||| | |||| | || | || |||||||||||| || ||||||| Sbjct 3653 AGAACAAACTCCACTTGCCGTTGGCCTCCACGCGCTTCATGAACAGGTCGGGCACCCACA 3594 Query 213844 GCGCGGTGAACAGGTCCCTGGTCC---TCCTCTCGTCCACTCCAGAGTTTTTGCGCAGAT 213900 ||||| ||||||||| | || | | ||||| || ||| |||||||| | Sbjct 3593 GCGCGTAGAACAGGTCGCGGGCACGGTGCAGCTCGT---TGCCGTGGTTCTTGCGCAGGT 3537 Query 213901 CTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCC 213960 | || || || || | ||| |||||||| ||||| | ||||||||| ||| |||| | Sbjct 3536 CCAGGAACTCGAACACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCGAAGCTGCCCTTGC 3477 Query 213961 TCTT---GCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTA 214017 ||| ||||||||||||||| || |||| |||||| | |||||| | ||| | Sbjct 3476 GCTTGCCGCCGCCCTGGTCCACGTACCGGGCCGTGTCGTTGAACACGCGCAGCATGGGGA 3417 Query 214018 CCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGC 214077 | |||||||| |||||||| || || || | || ||| | | |||| Sbjct 3416 TGATGCCGTTGGAGGAGCCGTTGGTGCCGCGAATGTAGCTGTTGGTGGCACGAATGTTGT 3357 Query 214078 TCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCT 214137 |||| || || || || || || |||||||||| |||||| || | | || | Sbjct 3356 GCATGCTGATGCCGATACCCCCCGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGT 3297 Query 214138 CCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGG 214197 | ||| || | ||| ||| || | | || | ||||||| || ||||| | Sbjct 3296 CATAGATACCCTCGATGGAGTCGTCCTGCATGGCCAATAGGAAGCAGGAGGACAGCTGCG 3237 Query 214198 GCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGA 214257 | | | || || | ||| || ||||| || | || || | | ||||| | || | Sbjct 3236 GACGCGGCGTTCCGGCGTTAAACAGCGTCGGCGTCGCGTGCGTGAAGAACTTCTGCGACA 3177 Query 214258 GGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCAC- 214316 |||| ||| |||||||| | | |||||||| ||||||||| || || ||| Sbjct 3176 TGAGCTCGTACGTCTCCAGCGCGGCCTGGATGTCGGCCTTGTGGATGCCCAGCGC-CACG 3118 Query 214317 CTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTTTGGGGCCCTT------GAGCAGG 214370 | ||| | ||| ||||| || | ||| | |||| ||| || || ||| Sbjct 3117 CGCATAATCATTTGCTGCGGACGCTCCA--CCACCTT----GCCGTTTACGCGGAAGAGG 3064 Query 214371 TAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAG 214403 ||| |||||| || || || ||||| |||||| Sbjct 3063 TAGCCGCGCTCGAGTGTTTTAAACCCGAAGTAG 3031 >seq4292 Length=2137 Score = 244 bits (270), Expect = 2e-59 Identities = 560/840 (67%), Gaps = 15/840 (2%) Strand=Plus/Minus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || ||||| | ||||| |||||||| ||||| |||| | ||||| | ||||| Sbjct 883 GTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGAGAGATCATGTCCAT 824 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || ||| ||||| ||| || | | || || |||| | | |||||| | Sbjct 823 CCAGTCGAACGGGTTCTTCACGTTGTAGATCTTTGGCACACCCAGCGAGTACAGCAGACG 764 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 || || ||| |||||||||| | ||||||| | ||||||||| || || ||| Sbjct 763 GTCGGCCACGAACTCGATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTCCAC 704 Query 48022 GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT 48081 || | | | | ||||| | ||| ||| ||| || || | |||||||| | Sbjct 703 AGGGAGCGAGTCGCGCACGAACTCGTGCTCGATCACCACCGCGTCGCGCACAATCTCGTG 644 Query 48082 AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTC 48141 |||||| ||| | | ||||| ||| ||||| || | | ||| || ||||| Sbjct 643 CACGCGGCTCTCCGGCAGCTTGTTCACCAG---CTTGGAGTACATGAGGCACGCGAAGTC 587 Query 48142 CCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGAC 48201 | |||||| || ||||| |||||||| ||| |||| ||||||| || |||||||||| Sbjct 586 CGTGTGCATACCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATGAG 527 Query 48202 CCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCAC 48261 || | || ||||||||||| || | ||| ||||| |||||||| ||||||||||| Sbjct 526 GCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAAATGCCCTCCAC 467 Query 48262 TGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG---CGTTCTTGTCTGAGATCCAGGA 48318 || |||||||| || | ||| | | || | | | ||| | ||| Sbjct 466 GGCGGCGAACGCCAGCAGACGCTCCGGGTACGACGACACACGCGGGTC---GCACCACTT 410 Query 48319 AAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTT 48378 |||||||||| || |||||||| | ||| || |||||||| ||||| || | || | Sbjct 409 GAGCGCCCAGTGCGCTTTCTTCTTCACGCACGGGATCGTCTCGATGGCGCGCAGCAGGTG 350 Query 48379 CTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAGA 48435 | ||| | |||||| | || || | |||||||| | ||||| ||| | Sbjct 349 GTCCTTCTCCACGGCGTCCTTGATGTACGTATCAATGAGCAGC---GAGTACACCTCGGC 293 Query 48436 GTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCAC 48495 ||| | ||||| || ||||||||||| ||||||||| | | |||| ||||||||| Sbjct 292 GTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGGACCTCGGGCACCTGCAC 233 Query 48496 TTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAA 48555 ||| || ||| || ||| ||||| || || || || || ||||| ||||| Sbjct 232 TTCATTGCTGAAGTTCATGGCCAGGTTCTCGTTCACAATACCGTCGCTCGCAGCGAAGAA 173 Query 48556 GGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTAC 48615 || || || || || | ||| |||||||||| || || |||| ||| | Sbjct 172 CGCCAGCACGTGCTTGATGAAGAACCGCTCGTTGTCCGTCAGGTTCGCCCAGTCCTTGAG 113 Query 48616 GTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACAT 48675 ||| | ||||||||| || || | |||||||| || || || || |||||||| Sbjct 112 GTCGTGCACCAGGTCCAGCTCCTCGGCCGTCCAGAACGAGGCCTCCGCCTTCTTGTACAT 53 >seq4320 Length=1636 Score = 168 bits (186), Expect = 1e-36 Identities = 280/404 (69%), Gaps = 3/404 (1%) Strand=Plus/Plus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || ||||| | |||||||||||||| ||||| |||| || |||||| | ||||| Sbjct 1236 GTACTCGCCCACGCGCTTCTCAAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCAT 1295 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || ||| ||||| ||| || | | | || ||||| | ||||||| | Sbjct 1296 CCAGTCGAACGGGTTCTTGACGTTGTAGATCTTGGACACGCCCAGTGAGTACAGCAGGCG 1355 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 ||||| ||| |||||||||| | ||||||| | ||||||||| ||||| ||| Sbjct 1356 GTCCGCCACGAACTCGATGTACTGGCACATGAGCGCCGAGTTCATGCCAATGAGCTCCAC 1415 Query 48022 GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT 48081 |||| | | | ||||| | ||| ||| ||| || || | ||| |||| | Sbjct 1416 AGGCAGCGAATCGCACACGAACTCGTGCTCAATCACCACCGCGTCGCGCACGATCTCGTG 1475 Query 48082 AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTC 48141 |||||| || | | |||||| | | |||| | || | | ||| || ||||| Sbjct 1476 CACGCGGCTTTCGGGCAGCTTGTTG---ACGAGCTTCGAGTACATGAGGCACGCGAAGTC 1532 Query 48142 CCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGAC 48201 | |||||| |||||||| |||||||||||| |||| ||||||| ||||||||||||| Sbjct 1533 CGTGTGCATACCTTCGTCTCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAG 1592 Query 48202 CCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGA 48245 || | || ||||||||||| || | ||| ||||| |||| Sbjct 1593 GCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGA 1636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931465531687680