Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq476 259 9e-64 seq4292 203 6e-47 seq4320 96.9 6e-15 >seq476 Length=26050 Score = 259 bits (286), Expect = 9e-64 Identities = 658/996 (66%), Gaps = 29/996 (3%) Strand=Plus/Minus Query 221504 AAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCG 221563 ||| |||| || || ||||| || ||||| |||||||| | ||| | | ||||||| | Sbjct 4131 AAGGCGTCCGCGAGGCCCTGGACGCCGATGCCGATGGGGCGGTGGCGCATGTTGGACTTG 4072 Query 221564 GCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATG 221623 ||| || | |||||| || ||||||||||||| | ||||||||||| | || | Sbjct 4071 CGCGCCTCGGCCACGGGGTAGTAGTTGACGTCGATGACCTTGTTGAGGTTGCGGGTCACC 4012 Query 221624 ACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACTCGCCGCCGTCGTGGAGG 221683 || || |||||| || ||||||| | |||||| |||||||| Sbjct 4011 ACCTTGGTGACCTCGTAGAGTTTCTGGTAGTCGAACAC---------GCCGTCGT----- 3966 Query 221684 GGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTG 221743 |||| || | || || ||| ||||||||| ||||||||||||||||| | Sbjct 3965 ----CCACGAACTTGGGCAGCGCCACGGAGGCCAGGTTGCACACGGCCACCTCGTCGGGG 3910 Query 221744 TTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTG 221803 || |||| || | ||| || ||||||||| | |||||| || |||| | Sbjct 3909 GACGTGTACTCCATCACCTCGCAGCACAGGTTGCTGGAGCGGATGGTGCCGAGGTTCTGC 3850 Query 221804 TGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGC 221863 || || |||||||| ||||| ||||||||||||||||| ||||| |||| ||||| | | Sbjct 3849 TGGTTGGACTTGCGGTTGGCCGCGTCCTTGTAGAGCATGAAGGGCACGCCCGTCTCGATC 3790 Query 221864 TGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCACCGTCCTCTTGACTGCACC 221922 || || |||| || | ||| || | ||| ||| | | ||| | | | || Sbjct 3789 TGCGCGTCCAGGATGGCGAACCACAGCT-GCTGCGCGTTGATGGTCTTGCGGGCGCGGCC 3731 Query 221923 CTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAG 221982 |||| | || ||| | ||||| | ||||||| || || | ||||| || Sbjct 3730 CTCGCGC---TCGTACTTGTCGTAGAGGCTCTCAAACTCGTCCCCCCAGCACTCGTAGAG 3674 Query 221983 GCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCAT 222042 || || | | ||| || | || |||||| | |||| | | || | || ||| Sbjct 3673 CCCGGGGGCCTCGTTGGGGCAGAACAAACTCCACTTGCCGTTGGCCTCCACGCGCTTCAT 3614 Query 222043 GAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCC 222102 ||| ||||| || | ||||||||| | || || || | || || ||| ||| ||| Sbjct 3613 GAACAGGTCGGGCACCCACAGCGCGTAGAACAGGTCGCGGGCACGGTGCAGCTCGTTGCC 3554 Query 222103 GTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGAC 222162 || ||| || | ||| |||| ||||| || | ||| |||||||| ||||| || |||| Sbjct 3553 GTGGTTCTTGCGCAGGTCCAGGAACTCGAACACGTCGGCGTGCCAGGGCTCGAGGTAGAT 3494 Query 222163 GGCCAGAGC-GCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGA 222221 ||| | ||| ||| |||||| ||| ||||| ||||| || || |||||| Sbjct 3493 GGCGA-AGCTGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTACCGGGCCGTGTCGTTGA 3435 Query 222222 AGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCAC 222281 | | ||| || | || | | |||||||| ||||||||||| |||||| Sbjct 3434 ACACGCGCAGCATGGGGATGATGCCGTTGGAGGAGCCGTTGGTGCCGCGAATGTAGCTGT 3375 Query 222282 CGCCGGCCCTCAGGT--TACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCAT 222339 | ||| | | || | | || | ||||||||||| || || || ||||| Sbjct 3374 TGGTGGCACGAATGTTGTGCATGCTG--ATGCCGATACCCCCCGCCCACTTGGAGATGCA 3317 Query 222340 GGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAG 222399 |||||| |||||| ||||| ||| ||||| || ||||| |||| | | || || Sbjct 3316 GGCGCACTGCTTGAGCGTGTCATAGATACCCTCGATGGAGTCGTCCTGCATGGCCAATAG 3257 Query 222400 AAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTG 222459 || || || |||| ||| | | | | ||||||||||||||| || | ||||| Sbjct 3256 GAAGCAGGAGGACAGCTGCGGACGCGGCGTTCCGGCGTTAAACAGCGTCGGCGTCGCGTG 3197 Query 222460 TGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTC 222495 || ||| | | ||||| || ||||||||||| Sbjct 3196 CGTGAAGAACTTCTGCGACATGAGCTCGTACGTCTC 3161 Score = 107 bits (118), Expect = 4e-18 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 221096 AGCACCTTGACCATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGG 221155 ||| |||| | || || ||||||||| | ||| || || | ||||| | | | | Sbjct 4533 AGCTCCTTCATCAGGTACTTGTTCACGATCGTGAACTCACCGGCCAGCACACGGCGGTTG 4474 Query 221156 TACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTG 221215 |||| ||| || ||| | || |||||| |||||||||||| |||||||| |||||| Sbjct 4473 TACATGTTGGACGTGTAGGGCTCGATGGACTCGTTGTTGCCTAGGATCTGGGCCGTGGAA 4414 Query 221216 GCGGTGGGCATGGGTGCCACCAGCAGACTGTTGCGCAGTCCG 221257 || ||||||||||| ||||||||||| |||||| || ||| Sbjct 4413 GCCGTGGGCATGGGGGCCACCAGCAGCGAGTTGCGAAGACCG 4372 >seq4292 Length=2137 Score = 203 bits (224), Expect = 6e-47 Identities = 557/847 (66%), Gaps = 19/847 (2%) Strand=Plus/Plus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| |||||||||||||||| | ||| |||||| ||||| ||| | || |||| Sbjct 47 TGGCAGATGTACAAGAAGGCGGAGGCCTCGTTCTGGACGGCCGAGGAGCTGGACCTGGTG 106 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTG 25599 | ||| | | | |||| || | | |||||| | || ||||| ||||| Sbjct 107 CACGACCTCAAGGACTGGGCGAACCTGACGGACAACGAGCGGTTCTTCATCAAGCACGTG 166 Query 25600 TTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACC 25659 |||| ||||| || || || ||||| ||||||||||| ||| | || |||| | Sbjct 167 CTGGCGTTCTTCGCTGCGAGCGACGGTATTGTGAACGAGAACCTGGCCATGAACTTCAGC 226 Query 25660 AGGGAAGTGCAGTACGTG---GAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAA 25716 | ||||||||| ||| |||| | || |||||||| |||||||| |||||||| Sbjct 227 AATGAAGTGCAG---GTGCCCGAGGTCCGCTGCTTCTACGGCTTCCAGATCGCCATCGAG 283 Query 25717 AATGTGCACTCTGAGGTGTATGCCAAGCT-TCTGATGACGTACATTACAGACGTCGCCGA 25775 || | ||| | |||||||| | ||| |||| |||||||| | |||| || || Sbjct 284 AACATCCACGCCGAGGTGTACTCGCTGCTCATTGAT-ACGTACATCAAGGACGCCGTGGA 342 Query 25776 GAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTG 25835 || || | ||| | | ||||||||| || || || | |||| ||| |||| || Sbjct 343 GAAGGACCACCTGCTGCGCGCCATCGAGACGATCCCGTGCGTGAAGAAGAAAGCGCACTG 402 Query 25836 GGCCATGAAGTGGATC-AACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTG 25894 ||| | |||||| | | | || | | | ||| ||||| ||| | || || | Sbjct 403 GGCGCTCAAGTGGTGCGACCCGCGTGTG-TCGTCGTACCCGGAGCGTCTGCTGGCGTTCG 461 Query 25895 CTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAG 25953 | || ||||||||||| || ||| || || || ||| ||||||||||||||||| || Sbjct 462 CCGCCGTGGAGGGCATTTTCTTCTCGGGCTCCTTCTGC-TCCATCTTCTGGCTCAAGAAG 520 Query 25954 AAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTC 26013 || |||||| || ||| ||| || |||||||| |||||| | ||||||||| | Sbjct 521 CGCGGCCTCATGCCTGGCCTGAGCTTCTCGAACGAGCTGATCAGCCGTGACGAGGGTATG 580 Query 26014 CACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAG 26073 |||| || || || ||||| | ||| | | | || | || || || | |||| Sbjct 581 CACACGGACTTCGCGTGCCTCATGTACTC---CAAGCTGGTGAAC-AAGCTGCCGGAGAG 636 Query 26074 AC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNN 26132 | ||| || || | || || |||| ||||||| | ||||| Sbjct 637 CCGCGTGCACGAGATTGTGCGCGACGCGGTGGTGATCGAGCACGAGTTCGTGCGCGACTC 696 Query 26133 NNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGT 26192 | ||||||||| |||||| |||| ||||| |||| || Sbjct 697 GCTCCCTGTGGAGCTGATCGGCATGAACTCGGCGCTCATGTGCCAGTACATCGAGTTCGT 756 Query 26193 GGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGA-CTCTACAGTACGCCTAACCCGT 26251 |||||||| |||||||| | |||||| | |||| | |||||| | ||||||| Sbjct 757 GGCCGACCGTCTGCTGTACTCGCTGGGTGT-GCCAAAGATCTACAACGTGAAGAACCCGT 815 Query 26252 TCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCG 26311 |||||| ||||| | || || | | || |||||||||||||| || ||| | || | Sbjct 816 TCGACTGGATGGACATGATCTCTCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGG 875 Query 26312 GCGACTA 26318 |||| || Sbjct 876 GCGAGTA 882 >seq4320 Length=1636 Score = 96.9 bits (106), Expect = 6e-15 Identities = 251/388 (65%), Gaps = 9/388 (2%) Strand=Plus/Minus Query 25934 CCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCA 25993 ||||||||||||||||| || || |||||| || ||| ||| || |||||||||| Sbjct 1618 CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTGAGCTTCTCGAACGAGCTCA 1559 Query 25994 TCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGC 26053 ||||| | ||||| ||| | |||| || || || ||||| | ||| || | | | Sbjct 1558 TCAGCCGAGACGAAGGTATGCACACGGACTTCGCGTGCCTCATGTACTCGAAGCTCGT-- 1501 Query 26054 TCCACAAACCTTCTCAAGAGAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAG 26112 || || || | | | || | ||| || ||| | || || |||| ||| ||| Sbjct 1500 --CAACAAGCTGCCCGAAAGCCGCGTGCACGAGATCGTGCGCGACGCGGTGGTGATTGAG 1443 Query 26113 AAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATG 26172 | ||||| | ||||||||| |||||| Sbjct 1442 CACGAGTTCGTGTGCGATTCGCTGCCTGTGGAGCTCATTGGCATGAACTCGGCGCTCATG 1383 Query 26173 AGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTC 26232 |||| ||||| |||| ||||| |||| ||||||| | ||||| | ||| || Sbjct 1382 TGCCAGTACATCGAGTTCGTGGCGGACCGCCTGCTGTACTCACTGGGCGTGTCCAAGATC 1323 Query 26233 TACAGTACGCCTA--ACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCA 26290 |||| ||| | | |||||||||||| ||||| | || ||| || | || ||||||| Sbjct 1322 TACA--ACGTCAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAGACCA 1265 Query 26291 ACTTCTTTGAAAAGAGGGTCGGCGACTA 26318 |||||||||| ||| | || ||||| || Sbjct 1264 ACTTCTTTGAGAAGCGCGTGGGCGAGTA 1237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928777725794880