Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq476 159 4e-34 seq4292 122 1e-22 >seq476 Length=26050 Score = 159 bits (176), Expect = 4e-34 Identities = 422/630 (67%), Gaps = 11/630 (2%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| | ||| | ||||| || || | ||||||||| || ||||| | | | Sbjct 3098 CCGCAGCAAATGATTATGCGCGTGGCGCTGGGCATCCACAAGGCCGACATCCAGGCCGCG 3157 Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 ||||||| ||||| ||||| || | || | |||| ||||| || || || || || Sbjct 3158 CTGGAGACGTACGAGCTCATGTCGCAGAAGT-TCTTCACGCACGCGACGCCGACGCTGTT 3216 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 || || || || || | |||||| ||||| |||||||| | |||| |||| || Sbjct 3217 TAACGCCGGAACGCCGCGTCCGCAGCTGTCCTCCTGCTTCCTATTGGCCATGCAGGACGA 3276 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 ||| ||| | |||||||||| || || | | |||| || ||||| |||||||| || Sbjct 3277 CTCCATCGAGGGTATCTATGACACGCTCAAGCAGTGCGCCTGCATCTCCAAGTGGGCGGG 3336 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACAA 75509 |||||| || || ||| || | | | |||| || | || ||||| || || | Sbjct 3337 GGGTATCGGCATCAGCATGCACAACATTCGTGCCACCAACAGCTAC-ATTCGCGGCACCA 3395 Query 75510 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 75569 | || || | || || || || ||||| ||||| || |||| ||| || || || | Sbjct 3396 ACGGCTCCTCCAACGGCATCATCCCCATGCTGCGCGTGTTCAACGACACGGCCCGGTACG 3455 Query 75570 TAAATCAAG-CGG-GGCGT-CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATG 75626 | | || | ||| ||| |||||||| | |||| ||||| | || || ||||| | Sbjct 3456 TGGACCAGGGCGGCGGCAAGCGCAAGGGCAGCTTCGCCATCTACCTCGAGCCCTGGCACG 3515 Query 75627 CCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTA 75686 |||| | | |||||||| || | || ||||| || |||| | || | ||| Sbjct 3516 CCGACGTGTTCGAGTTCCTGGACCTGCGCAAGAACCACGGCAACGA-GCTGCACCGTGCC 3574 Query 75687 -GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGT 75745 | || || || | | |||||| | || ||||| ||||||||||| || |||| Sbjct 3575 CGCGACCTGTTCTACGCGCTGTGGGTGCCCGACCTGTTCATGAAGCGCGTGGAGGCCAAC 3634 Query 75746 GGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGA-CGCGGTGGGTGA 75804 || | ||| | | ||||| || || |||| || || |||| ||| || | ||| || Sbjct 3635 GGCAAGTGGAGTTTGTTCTGCCCCAACGAGGCCCCCGGGCTCTACGAGTGCTG-GGGGGA 3693 Query 75805 GGAGTTTGAAGCCCTCTACACAAAGTATGA 75834 |||||||| ||||||| ||||| || Sbjct 3694 CGAGTTTGAGAGCCTCTACGACAAGTACGA 3723 >seq4292 Length=2137 Score = 122 bits (134), Expect = 1e-22 Identities = 336/503 (67%), Gaps = 14/503 (3%) Strand=Plus/Plus Query 65021 AGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAA-GTCTCGCTCCTTCGCCGAG 65079 ||||||| ||| | ||||| | || |||| ||| | || ||| || | | | ||| Sbjct 387 AGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGTGTGTCG-TCGTACCCGGAG 445 Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATT 65139 || || | ||||| || |||||||| || |||||||| || || |||||| | || Sbjct 446 CGTCTGCTGGCGTTCGCCGCCGTGGAGGGCATTTTCTTCTCGGGCTCCTTCTGCTCCATC 505 Query 65140 TATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCC 65199 | ||| | |||||||| || |||||||| ||||| ||||||| || || || || | Sbjct 506 TTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTCTCGAACGAGCTGATCAGC 565 Query 65200 CGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTGCGTAATAGA 65259 || || |||||| | ||| ||| || || ||| ||| | | | || | | | Sbjct 566 CGTGACGAGGGTATGCACACGGACTTCGC-GTGC--CTCATGTACTCCAAGC-TGGTGAA 621 Query 65260 CCCACTACCGAAACTA----TCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGG 65315 | || ||| | | |||| || ||| || ||||| | ||| ||| | | Sbjct 622 CAAGCTGCCGGAGAGCCGCGTGCACGAGATTGTGCGCGACGCGGTGGTGATCGAGCACGA 681 Query 65316 GTTCATCTTGGACGCACTCCCATGTA-ATCTCATCGGTATGAACTCTGAGAAGATGTCCG 65374 |||| | ||| | ||||| ||| | || ||||| |||||||| | | |||| | Sbjct 682 GTTCGTGCGCGACTCGCTCCC-TGTGGAGCTGATCGGCATGAACTCGGCGCTCATGTGCC 740 Query 65375 AGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGG-GTGCCACCCATTTGG 65433 ||||||| |||| ||| | || ||||| || | | | |||| |||||| || | Sbjct 741 AGTACATCGAGTTCGTGGCCGACCGTCTGCTGTA-CTCGCTGGGTGTGCCAAAGATCTAC 799 Query 65434 AACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTC 65493 |||| |||||| || || |||| ||||| | || || | || |||||||||||| Sbjct 800 AACGTGAAGAACCCGTTCGACTGGATGGACATGATCTCTCTCCAGGGCAAGACCAACTTC 859 Query 65494 TTTGAGAAGCGAGTTGGGGACTA 65516 || |||||||| || || || || Sbjct 860 TTCGAGAAGCGCGTGGGCGAGTA 882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596526520217760