Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq342 143 8e-29 seq1033 105 2e-17 seq467 98.7 3e-15 >seq342 Length=33373 Score = 143 bits (158), Expect = 8e-29 Identities = 185/254 (73%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 || |||||||| ||||| || | || |||||||| |||||||| ||||| ||||| Sbjct 24102 CGCCGCTGAATGTAACCTGTCTCGGCCGTCTTTACAGCCGTATCAATCAGACCTTCACGA 24043 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCA 302712 ||||||||||| |||||||| | |||| ||| | ||| | | ||| | || Sbjct 24042 CCACCCATAGCGTGGAAGAAGAATTCTTGAGGTGTCAAACCCTTCAGGTACGAGTTTTCG 23983 Query 302713 ACGAAACCACGCGCCTCGGG---CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTG 302769 ||||||||||| ||||| | |||| || |||| |||| ||||| || | | Sbjct 23982 ACGAAACCACGACTTTCGGGGCCCAAATCATC---CTTGCCGTAGTGCGGCAGCGTACGG 23926 Query 302770 TTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATC 302829 | | | | || || |||||||||||||| |||||||||||||| |||| || | ||| Sbjct 23925 TGATTAAAACCATACGGGATACGCTTTCCTTCAACGTTCTGCTGACCCACACAAGCAATA 23866 Query 302830 ATCTGCGAAATATT 302843 |||||||||||||| Sbjct 23865 ATCTGCGAAATATT 23852 >seq1033 Length=12507 Score = 105 bits (116), Expect = 2e-17 Identities = 178/258 (69%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 |||||| | ||| || ||| ||||| || |||| ||| || || || | | | || Sbjct 5697 GGCGATGATACCGCAGATATCGCACACGTGCACGCGGTACGCGTCCGAGTTGGCGAACAG 5638 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 || || || |||| | | ||||| || |||| |||||| |||||||| || || Sbjct 5637 GCGGTCCATGAGGAAGTTGGCCGAGCCGTGCGAGATCAGACAATCGCGCTCCATCTCTCC 5578 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582 | ||| |||||||| |||||||| | ||| || ||||| || || || | || Sbjct 5577 CATACGCAGACCACCCTCGCGAGCACGACCTTCCATGGGCTGGCGCGTCAGCATCGTCAC 5518 Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642 ||||| ||||| || ||| || | ||||||||||| || ||||||||||| Sbjct 5517 GGGACCACGCGAGCGCGAGTGGATCTTGTCGTCGACCATATGCTTCAGGCGCTGGTAGAA 5458 Query 251643 TGCGGGACCGATGAAGAT 251660 | ||| ||||||||||| Sbjct 5457 CGTGGGTCCGATGAAGAT 5440 >seq467 Length=26285 Score = 98.7 bits (108), Expect = 3e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 354003 CTTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTC 354062 ||| || || | || || |||||||||||||| ||||| ||| | || || || ||||| Sbjct 12649 CTTGATGGCCGAAGCAAGGGCACCAAGCGAGTCGCGGTCAAGGTAGTTCGTCGGCTCGTC 12708 Query 354063 AAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTG 354122 ||| | || | |||||| | || |||||| || |||||||| || ||||| |||||||| Sbjct 12709 AAGCACCAGGATGTGCGGGTTCAGCCACATAGCAGCAGCCAGCACGACCTTCACCTTCTG 12768 Query 354123 TCCGCCTGATAG 354134 || || || || Sbjct 12769 ACCACCAGACAG 12780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471708659280849