Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq476 141 8e-29 seq45 102 7e-17 seq6 93.3 4e-14 seq745 86.0 6e-12 >seq476 Length=26050 Score = 141 bits (156), Expect = 8e-29 Identities = 890/1409 (63%), Gaps = 69/1409 (5%) Strand=Plus/Minus Query 138484 TCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAA 138543 || || ||||| || |||| | || | || |||||||||| || || || ||| Sbjct 4530 TCCTTCATCAGGTACTTGTTCACGATCGTGAACTCACCGGCCAGCACACGGCGGTTGTAC 4471 Query 138544 ATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCG 138603 |||||| ||| | ||||| | || |||||||| || || ||||| ||||||| || Sbjct 4470 ATGTTGGACGTGTAGGGCTCGATGGACTCGTTGTTGCCTAGGATCTGGGCCGTGGAAGCC 4411 Query 138604 GTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATT-CGTTC--C 138660 || |||||| ||||||| || || || || | |||||| |||| ||||| | Sbjct 4410 GTGGGCATGGGGGCCACCAGCAGCGAGTTGCGAAGACCGTGT---TTGACCACGTTCTCC 4354 Query 138661 TTGAGCGACGACCAGTCCCACAAATC---GCTAGGTTTTTTGTTCCACATATCGTACTGT 138717 ||||||| || ||||| ||| | | | | || | | |||||| ||| |||| Sbjct 4353 TTGAGCGCCGCCCAGTTCCAGAGACCCGAGGACGGGGTGACGCCCCACATGTCGAACTGG 4294 Query 138718 AACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCC 138777 || || ||| || || || ||| | | ||| ||||| || | ||| | || Sbjct 4293 AAGATCCCCTTGCTGGCCGGCGAGCCCTGGAACGTCTCGTAGGGGCCGAGCTCCTTGGCA 4234 Query 138778 AACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGC 138837 | ||| || || ||||| || | ||||| || || ||| || | || |||||| Sbjct 4233 ATCTCCATGGACGTCTCGACGGCGGCGTAGTAGATCGTCTCGAAGATGTTCTTGTTGAGC 4174 Query 138838 AATCGGGCCTCGGCGCTCTCGTACGG------CATGCGGAGCATCGTGAACGCGTCGGCC 138891 ||||||| |||||||| ||| |||| ||| |||| ||||| || Sbjct 4173 TCGCGGGCCTGCTCGCTCTCGAACGCGTAGTTCATGAGGA------TGAAGGCGTCCGCG 4120 Query 138892 AGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCG-GCTTC 138950 || || || ||||| | |||| ||||| ||||||| || ||| ||||| || || Sbjct 4119 AGGCCCTGGACGCCGATGCCGATGGGGCGGTGGCGCATGTTGGAC----TTGCGCGCCTC 4064 Query 138951 G---ATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGT 139007 | | || || ||||| || ||||||| ||||| | || || |||||||| || Sbjct 4063 GGCCACGGGGTAGTAGTTGACGTCGATGACCTTGTTGAGGTTGCGGGTCACCACCTTGGT 4004 Query 139008 CGTATGCTTTAATCGTTCAAAATCGTATGTGCCCCCGTTGTCGTCGACGA-CGTCGACAA 139066 | | | | ||| | ||| | | || |||||| |||| | | | || Sbjct 4003 GACCTCGTAGAGT--TTC----TGGTAGTCGAACACGCCGTCGTCCACGAACTTGGGCAG 3950 Query 139067 ATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATT 139126 | ||| ||||| | ||||||||| ||||| ||||||||| |||| | Sbjct 3949 C------GCCACG----GAGGCCAGGTTGCACACGGCCACCTCGTCGGGGGACGTGTACT 3900 Query 139127 CGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTT 139186 | | | ||| |||| || || | ||| || || | || || || ||| | Sbjct 3899 CCATCACCTCGCAGCACAGGTTGCTGGAGCGGATGGTGCCGAGGTTCTGCTGGTTGGACT 3840 Query 139187 TTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTA 139246 | ||||| || || ||||| ||||| | || ||| || || | || | || | Sbjct 3839 TGCGGTTGGCCGCGTCCTTGTAGAGCATGAAGGGCACGCCCGTCTCGATCTGCGCGTCCA 3780 Query 139247 TAATGAATTTGAACAAGTCCCTAGCTTGTAT----TTGACGCACGTAAAGTTCGTCGCGC 139302 ||| ||| | | || | || ||| || || | | |||||| Sbjct 3779 GGATGGCGAACCACAGCTGCTGCGCGTTGATGGTCTTG-CGGGCGC---GGCCCTCGCGC 3724 Query 139303 TCGTACTTTTCGTAGAGTTCGTCGAA-TCGTTCACCGTAGGCGTCAGAAAGATCGCGACA 139361 |||||||| |||||||| || || |||| | || || || | || || | Sbjct 3723 TCGTACTTGTCGTAGAGGCTCTCAAACTCGTCCCCCC-AGCACTCGTAGAGCCCGGGGGC 3665 Query 139362 CTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATC 139421 || || || || | | ||| |||||| |||| |||||| |||||||||| || Sbjct 3664 CTCGTTGGGGCAGAACAAACTCCACTTGCCGTTGGCCTCCACGCGCTTCATGAACAGGTC 3605 Query 139422 CGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTT-ATCTTCCGAACCCATGTTAC 139480 || | ||||| ||| | | || ||||| || | | || || || || | | Sbjct 3604 GGGCACCCACAGCGCGTAGAACAGGTCGCGGGCACGGTGCAGCT--CGTTGCCGTGGTTC 3547 Query 139481 GTTT-CATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATT 139539 | || || ||||| || || ||||| |||||||| || || || |||||||| | Sbjct 3546 TTGCGCAGGTCCAGGAACTCGAACACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCGAAG 3487 Query 139540 GCGCCTTTCCGTTTGCCACCT---TGATCGACGTGTCGTACAGCATTATTGAATACGCGC 139596 ||| || || ||||| || || || |||| || | | | ||||| |||||| Sbjct 3486 CTGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTACCGGGCCGTGTCGTTGAACACGCGC 3427 Query 139597 AACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCT 139656 | ||| || | ||| | | | |||||||||| || ||| |||||| || Sbjct 3426 AGCATGGGGATGATGCCGTTGGAGGAGCCGTTGGTGCCGCGAATGTAGCTGTTGGTGGCA 3367 Query 139657 CGGACGTCATGTACAT--TGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAAT 139714 || | || ||| ||| |||||||||| || || | | ||||| || | |||| | Sbjct 3366 CGAATGT--TGTGCATGCTGATGCCGATACCCCCCGCCCACTTGGAGATGCAGGCGCACT 3309 Query 139715 CGCGTAAT-GTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCAT 139773 || | | || || || ||||| ||| |||||||||||| | | || ||||| Sbjct 3308 -GCTTGAGCGTGTCATAGATACCCTCGATGGAGTCGTCCTGCATGGCCAATAGGAAGCAG 3250 Query 139774 GACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAAC 139833 || || || ||||| | ||| ||||| |||||| || || ||||||||||||| Sbjct 3249 GAGGACAGCTGCGGACGCGGCGTTCCGGCGTTAAACAGCGTCGGCGTCGCGTGCGTGAAG 3190 Query 139834 ATTTGTTTCGACATCAATTCGTACGTTTC 139862 | | | |||||| | |||||||| || Sbjct 3189 AACTTCTGCGACATGAGCTCGTACGTCTC 3161 >seq45 Length=78880 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || ||||| ||||| || || || ||||| || || || | | Sbjct 56830 GATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTC 56889 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || | || || || || ||||||||||| || || || || || || || Sbjct 56890 GGACTCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCTGACCA 56949 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| ||||||| || || || ||||| ||||| | | || || || || Sbjct 56950 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACGTTGAGCGACTACAA 57009 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||||| ||||| || ||| ||||| | || |||| || ||| Sbjct 57010 CATCCAGAAGGAGTCGACCCTTCACCTGGTGCTTCGCCTGCGTGGTGGC 57058 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| ||||| || || || ||||| || || || | | Sbjct 57059 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 57118 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || || ||||||||||| || || || || || || || Sbjct 57119 GACTCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCTGACCAG 57178 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| || || || ||||| ||||| | | || || || ||| Sbjct 57179 CAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACGCTGAGCGACTACAAC 57238 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || ||||| ||||| || ||| ||||| Sbjct 57239 ATCCAGAAGGAGTCGACTCTTCACCTGGTG 57268 >seq6 Length=256829 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 |||||||||||||| | || ||||| || || || || || |||||||| || || | Sbjct 245952 ACGATGCAGATCTTCGTAAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCG 246011 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||| | | || | || || || ||||| || ||||| || || || || || || Sbjct 246012 TCGGACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCTGAC 246071 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || || ||||||| || || || ||||| || || | | || || || Sbjct 246072 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTTGAAGACGGCCGCACGCTGAGCGACTAC 246131 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || ||||| || || || ||| ||||| |||| |||| || ||| Sbjct 246132 AACATCCAGAAGGAGTCTACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 246182 >seq745 Length=17434 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || ||||| || || || | || Sbjct 11925 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 11984 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||| | || | || || || || ||||| ||||| || || || || || || || Sbjct 11985 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 12044 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || || |||||||| ||||| || ||||| ||||| Sbjct 12045 CAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGA 12079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449865111769560