Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_022065.1 Length=74533 Score E Sequences producing significant alignments: (Bits) Value seq495 165 4e-36 >seq495 Length=27618 Score = 165 bits (182), Expect = 4e-36 Identities = 336/496 (68%), Gaps = 5/496 (1%) Strand=Plus/Plus Query 65191 CGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGA 65250 ||| | |||||| |||||||| || | ||| | | ||||||||||| ||||| || || Sbjct 12772 CGCATTCATCGATGCTGAGCATGCCATTGACGCCCATTACGCCAAGGCTCTCGGCGTCGA 12831 Query 65251 CCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGA 65310 | ||||| || || ||||| ||| | ||||| | || || ||||||| || Sbjct 12832 CATCGACGCGCTGTACGTCTCGCAGCCCGACTCGGGCGAAGAAGCTCTTGAGATCGCCGA 12891 Query 65311 CCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGT 65370 | ||| ||| ||| || | | || | |||| || | ||| |||||| || ||||| Sbjct 12892 CACGCTCATCAGGTCGGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCAGCTCTGGT 12951 Query 65371 GCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCT 65430 |||||| || ||||| ||||| || || || ||| || | | ||||| ||||| || Sbjct 12952 GCCGCGAGCGGAGCTGGAAGGTGAAATGGGCGACCAGCAGATTGCGCTGCAGGCGCGACT 13011 Query 65431 CATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAAC-ACGCTGACGC 65489 |||| ||||| |||| ||||| || || | | |||| ||||| | || | Sbjct 13012 CATGAGTCAGGCGCTGCGGAAGCTGACGGGGTCGCTGTCCAAGTCCAACTGCACT-ATTA 13070 Query 65490 TCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCA 65549 ||| | |||||| | ||| ||||| | |||| | || ||| | |||| | Sbjct 13071 TCTTCCTGAACCAGATCCGCCAGAAGGTTGGCA---TTATCTTCGGATCTCCTGAGGTGA 13127 Query 65550 CCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCG 65609 | | ||||||| || ||| | | ||||| || || || |||| | ||||| | Sbjct 13128 CGTCAGGCGGCACTGCCTTGCGCTATTACGCGTCTGTGCGGTTGGACATTCGTCGTAAGA 13187 Query 65610 CCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGA 65669 | || |||||||| || ||| |||||||||| || ||||||||| | ||||| Sbjct 13188 CGGCCATCAAGGAAGGTGACCAGGTTGTCGGCAACGAGACGGTGGTGAAGGTGGCCAAGA 13247 Query 65670 ACAAGCTGGCCCCGCC 65685 ||||||||||| |||| Sbjct 13248 ACAAGCTGGCCTCGCC 13263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238364016278318