Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq6 82.4 6e-11 >seq6 Length=256829 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/232 (68%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 29555 GTTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAAT 29614 |||| || || | || ||||||||||| || ||||| || || || || ||||| || | Sbjct 246185 GTTG-CCACCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGT 246127 Query 29615 CCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCG 29674 | | ||||| || || || || |||||||| | |||| | ||||| || | Sbjct 246126 CGCTCAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAG 246067 Query 29675 GCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTT 29734 |||| || ||||| ||||| || | || || || || | || | | ||| || | | Sbjct 246066 GCGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCT 246007 Query 29735 CTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || || || || || ||||| || | || || || || |||||||| Sbjct 246006 CCACGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTTACGAAGATCTGCAT 245955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385192077799557