Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq758 116 3e-20 seq342 91.5 1e-12 >seq758 Length=17183 Score = 116 bits (128), Expect = 3e-20 Identities = 217/318 (68%), Gaps = 3/318 (1%) Strand=Plus/Plus Query 282181 TACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTAC 282240 |||||||||||||||||| ||||| || |||| | ||||| || | ||| || | || Sbjct 5521 TACAAGACGATTATCAAAGTCTTCGCCACCCAGATGAGTATCGCCCGCCGTCGCCTTCAC 5580 Query 282241 TTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATC 282300 | ||| | || ||||||| | | || | |||||| || || || |||| ||| Sbjct 5581 CTCGAAGATGCCTTCTTCAATCGTAAGCAGCGAGACATCAAACGTCCCGCCTCCCAGATC 5640 Query 282301 AAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGC 282360 ||| || || || || || | | || || || || || ||||||| ||||| Sbjct 5641 AAAGATCAGCACGTTGTGCTCACCGCC---CTTCTTGTCCAGCCCGTACGCAATGGCAGC 5697 Query 282361 AGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTT 282420 ||| || || ||||| || || | || || || || ||||| || || || || || Sbjct 5698 AGCGGTCGGCTCATTGATGATACGCAGCACGTTCAGCCCAGCGATAGCCCCGGCGTCCTT 5757 Query 282421 AGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTAC 282480 |||||||| | || |||||||| ||||| || || || || | ||||||| | || Sbjct 5758 CGTGGCTTGGCGCTGCGAATCGTTGAAATACGCTGGGACCGTCACCACGGCATTCTTCAC 5817 Query 282481 TTCTTTTCCAATATAAGC 282498 || || || || ||||| Sbjct 5818 TTGCTTACCGATGTAAGC 5835 >seq342 Length=33373 Score = 91.5 bits (100), Expect = 1e-12 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 432282 TTGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCT 432341 ||| | ||||| |||||||||||| | || || ||||||| ||||||||||| | || Sbjct 22529 TTGCGCGGTAAGGAAGGTCGTATTCGTGGTAACCTGATGGGTAAGCGTGTCGACTTTTCG 22588 Query 432342 GCACGTACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTC 432399 || |||||||| ||||| ||||||| || |||||| | | |||| || || |||| Sbjct 22589 GCCCGTACAGTCATTACGGCTGATCCCAACATTGCTATTGACCAAGTCGGCGTCCCTC 22646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740346773713602