Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq45 100 3e-16 >seq45 Length=78880 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 137209 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 137268 |||| || || || || || |||||||| ||||||| |||| ||| || || || Sbjct 57033 TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAACGTGCGGCCGTCCTCAAGCTGC 56974 Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328 || ||||| |||||||||| ||||| || || || ||||| || ||||| ||||| Sbjct 56973 TTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTGGATTTTC 56914 Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388 || || | | || | || ||| | || || || || | || | ||||||||||||| Sbjct 56913 TGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTC 56854 Query 137389 AATGTTTTTACGAATATTTGCAT 137411 | || || ||||| || ||||| Sbjct 56853 AGCGTCTTCACGAAGATCTGCAT 56831 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 137209 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 137268 |||| || || || || || |||||||| ||||||| |||| ||| || || || Sbjct 57261 TGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCAAGCTGC 57202 Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328 || ||||| |||||||||| ||||| || || || ||||| || ||||| ||||| Sbjct 57201 TTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTGGATTTTC 57142 Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388 || || | | || | || ||| | || || || || | || | ||||||||||||| Sbjct 57141 TGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTC 57082 Query 137389 AATGTTTTTACGAATATTTGCAT 137411 | || || ||||| || ||||| Sbjct 57081 AGCGTCTTCACGAAGATCTGCAT 57059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488508721016400