Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_023848.1 Length=163023 Score E Sequences producing significant alignments: (Bits) Value seq1033 82.4 8e-11 >seq1033 Length=12507 Score = 82.4 bits (90), Expect = 8e-11 Identities = 115/160 (72%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 22088 GAGAGCG-AGATCTTCATAGGACCCACATATTACCACAGACTCAAACATATGGTCAAGGA 22146 || |||| |||||||||| |||||||| | ||||| | || || ||||||||| | || Sbjct 5430 GACAGCGCAGATCTTCATCGGACCCACGTTCTACCAGCGCCTGAAGCATATGGTCGACGA 5489 Query 22147 CAAGATGCACGCCCGATCCCACGGCCAGGTGACGACGTTGCACCGGCAGCCGAACTGTGG 22206 |||||| ||| | || || | || | ||||||| | || || ||||| | || Sbjct 5490 CAAGATCCACTCGCGCTCGCGTGGTCCCGTGACGATGCTGACGCGCCAGCCCATGGAAGG 5549 Query 22207 GCGTGCTCAGGGCGGCGGGCTGCGGTTCGGAGAGATGGAG 22246 ||||||| | || || ||||| | |||||||||||| Sbjct 5550 TCGTGCTCGCGAGGGTGGTCTGCGTATGGGAGAGATGGAG 5589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521507937888360