Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq745 104 2e-17 seq45 96.9 2e-15 seq6 95.1 8e-15 >seq745 Length=17434 Score = 104 bits (114), Expect = 2e-17 Identities = 138/189 (73%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 33562 TTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATC 33621 || || |||||||| || ||||| ||||| |||| || | || || ||||| || ||| Sbjct 12112 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 12053 Query 33622 AAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC 33681 || |||||||| || |||| | || || ||||| |||||||| || | ||| ||| Sbjct 12052 AAGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGA-CATTGTC 11994 Query 33682 ACGG-TGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAA 33740 | | ||||| | |||||||| | |||||| || || || || | || || ||||| Sbjct 11993 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 11934 Query 33741 GATCTGCAT 33749 ||||||||| Sbjct 11933 GATCTGCAT 11925 >seq45 Length=78880 Score = 96.9 bits (106), Expect = 2e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | ||||| || ||||| ||| || || |||||||| ||| || ||||| | Sbjct 57274 ACGAAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCC 57215 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 ||| || | || || || || || |||| ||||||||| || |||| | || || || Sbjct 57214 GTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTT 57155 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| |||||||| |||| | | ||| | | ||| | |||||||| | ||||| Sbjct 57154 GTCTTGGATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGA 57096 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || || || | ||| || || ||||||||||| Sbjct 57095 TCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 57059 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || || | ||||| || || || ||| || || |||||||| ||| Sbjct 57057 CCACCACGCAGGCGAAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTC 56998 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||| |||| || | || || || || || |||| ||||||||| || |||| Sbjct 56997 AACGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 56938 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| |||||||| |||| | | ||| | | ||| | ||||| Sbjct 56937 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCAC 56879 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| | ||||||||| || || || | ||| || || ||||||||||| Sbjct 56878 GTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 56831 >seq6 Length=256829 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | ||||| || || || ||| || || |||||||| ||| Sbjct 246181 CCACCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 246122 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| || | || || || || || |||| |||||||| || |||| Sbjct 246121 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGG 246062 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| ||| ||||| |||| | | ||| | | ||| | ||||| Sbjct 246061 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCAC 246003 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 ||| | |||||| || || || || | ||| ||||| ||||||||||| || Sbjct 246002 GTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTTACGAAGATCTGCATCGT 245952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328680856875840